Gene detail information of Glyur000249s00015884.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05010.1 | 8.00E-54 | ethylene-forming enzyme |
| NR | ACJ84384.1 | 4.23E-80 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9MB94|ACCO_PRUMU | 5.00E-75 | 1-aminocyclopropane-1-carboxylate oxidase |
| trEMBL | tr|B7FI05|B7FI05_MEDTR | 2.00E-80 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84384.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00249 | 200623 | 202379 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05933 | E1.14.17.4 | EC:1.14.17.4 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000249s00015884.1 | PF14226.1 | DIOX_N | 5 | 98 | 1.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.917 |
| SRR1783600 | control | 2.703 |
| SRR1783602 | moderate drought stress | 2.008 |
| SRR1811619 | moderate drought stress | 1.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.756 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.642 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.501 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.531 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.273 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.274 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.723 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.588 |
| SRR2868004 | Drought Stress (root) | 49.525 |
| SRR2967015 | Control (root) | 5.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 590.488 |
| SRR9715740 | Leaf | 472.526 |
| SRR9715741 | Leaf | 699.138 |
| SRR9715739 | Root | 1.475 |
| SRR9715742 | Root | 22.550 |
| SRR9715743 | Root | 21.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.345 |
| SRR8749028 | MeJA induced 9h | 0.717 |
| SRR8749029 | MeJA induced 9h | 0.237 |
| SRR8749030 | Uninduced | 7.174 |
| SRR8749031 | Uninduced | 3.269 |
| SRR8749032 | Uninduced | 2.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.596 |
| SRR8400027 | Control - Root | 5.927 |