Gene detail

Gene detail information of Glyur000249s00015879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05000.1	7.00E-79	Phosphotyrosine protein phosphatases superfamily protein
NR	XP_007141657.1	4.98E-140	hypothetical protein PHAVU_008G214300g [Phaseolus vulgaris]
COG	YP_826138.1	1.00E-11	hypothetical protein Acid_4894 [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9ZVN4\|Y1500_ARATH	5.00E-101	Probable tyrosine-protein phosphatase At1g05000
trEMBL	tr\|V7BB38\|V7BB38_PHAVU	2.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:ESW13651.1}

Sequence

Transcript Sequence

>Glyur000249s00015879.1
CTCAAATCTGTATAAATAGGTAACAGCTTCCCACTCTCTTCTTTCACCTCCCTTCCAGTATTTCACTATAACTGCCATGCCCATTTCCTTTCTCTCTTCAAAGGAACCACCTTTTTTACCTTTCACTAAAGGCCATTCCATTCAGCTTCAGTAGTAGAAAAAGGGTTCCACTATACTACTAAGTTGTACTCTTCCCTCCAAAGCCCAAAACCAAAAACCTCAAGGAATATCCTCTTTGATCCCATCCCAACCCCTCCCTTTTCCATCCCTTAATTTTTTTTAAAATATATATACACATAATTTCATACATATTATTGCATACACTCCAAATACTTCCCTTACTTAGCTGTTGTTCTTCTCTCTCTATCTCTCTCTCTCTCCCTCTCTTTGATCCCAAAAACAAAAGCTTCCAACTTTGATATGCAAGTGGCAGCAGAAGTTCAGCAGCATCACCAGCAAAGGCACCAAGAGAGCCAGATGTGTAGGAAGATCCAACTGAGTATCACCGATCACACCCTCTCTCACCCCACCGCCGTTGATGATGATGANGACAAGATGGACGGCGAGGATCTCTTAGTACCACCCCTCAATTTCGCCATGGTTGATAACGGCATTTTCCGCTCTGGCTTCCCTGAACCCGCCAACTTCTCCTTCCTTCAAACACTTGGCCTCCGCTCCATCATATATTTGTGTCCTGAGCCGTATCCGGAGGCTAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCATTTTGGGATTGAGGGTCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGCGAAGCACTAAAAGTTGTCCTTGATGTCAGGAACCACCCGGTTATAATTCACTGTAAGCGGGGAAAGCATCGAACGGGTTGTTTGGTCGGATGCTATAGAAAATTGCAGAAATGGTGCTTGTCATCTGTGTTTGACGAGTACCAGCGCTTCGCAGCTGCCAAATCAAGAGTTTCGGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCTTGAAGCATTTGCCCTTACCATTTTCTTGTTTGAAGAGGTAANAATAGACCCAAAGTTATGCTAAGTTGGGGTTTCCCTTTCTTTTAGCTTGTGAAANTGAACCCCAAGGTTCTTCTTTCTGCCTTTGGAATAAATAAATAGGAAAAGGTGATGAACTCCTCCAATGCATTGCAGCGGCAAGGGAATAATTCTTCTTCTCCCATTTTAAGAATAAGATATAAGAAATTTTCAGGAATTAGTAGAGCATTTGCATTACCTGTATCTCTGTGTAACCCCCCCCCCCCCAACCTTTTATTCTATTTTTCTTTGCTGTTGCTCCCCCATTCATCAACAATTGAGTGTAGATAAAGTCTTGATTTTTATCTCGAGGCTCAGAGAAATTCAAGAAAGGTAGAAAAACCCTTGTTTGTCTACCAAAAAATCTTGGTGGGTAGCCGAGCAGAGAAACTTTTAAATTTTATTTGCTAAATTGATAAAAGCCAAGTTTCAATGTGGTAATCATGATTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTCTCTTGGGATAATTGCATGCTGCTGGATAAAAGGATGTGAAAAGATGTGAAACAGCCACACTGTAAATCTGTAATAATGTAAGTAAAGGTAGAAGGGGATCATGTTTCACGTTGAGACTATGTTGTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	188609	192454	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016311 dephosphorylation

molecular_function

GO:0004725 protein tyrosine phosphatase activity

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015879.1	PF03162.8	Y_phosphatase2	52	204	8.80E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.033
SRR1783600	control	95.229
SRR1783602	moderate drought stress	87.931
SRR1811619	moderate drought stress	86.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.574
DRR006520	Root Summer glycyrrhizin high producing strain	9.020
DRR006521	Root Winter glycyrrhizin high producing strain	7.094
DRR006522	Root Winter glycyrrhizin high producing strain	6.654
DRR006523	Root Summer glycyrrhizin low producing strain	8.610
DRR006524	Root Summer glycyrrhizin low producing strain	9.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.687
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.140
SRR2868004	Drought Stress (root)	23.729
SRR2967015	Control (root)	21.329

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.670
SRR9715740	Leaf	7.591
SRR9715741	Leaf	10.554
SRR9715739	Root	46.130
SRR9715742	Root	31.275
SRR9715743	Root	31.443

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.993
SRR8749028	MeJA induced 9h	13.629
SRR8749029	MeJA induced 9h	14.115
SRR8749030	Uninduced	30.723
SRR8749031	Uninduced	67.866
SRR8749032	Uninduced	13.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.942
SRR8400027	Control - Root	89.255