Gene detail

Gene detail information of Glyur000249s00015874.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04990.2	4.00E-91	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004491091.1	0	PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cicer arietinum]
Swissprot	tr\|Q94AD9\|C3H3_ARATH	2.00E-109	Zinc finger CCCH domain-containing protein 3
trEMBL	tr\|G7KH86\|G7KH86_MEDTR	0	Zinc finger CCCH domain protein {ECO:0000313\|EMBL:AES99829.1}

Sequence

Transcript Sequence

>Glyur000249s00015874.1
ATGTTGTGGAGCAGCCACGTGGAGGGTAATATCGGTCTTCGGGGTTTGATCGAACAAAGCAAAAGGGTCACACTTGCTATTTCAACGCTACCAGATGCCAGAAAATCGACAGAAGCAATTCGTCGATTGAAAATCAATGGTAATAGGGATAGAGATGCTGCAGCTCAATCCACCCCATATCCGGATCGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGCTAATGTTTCACTCGTTACTCAGTATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAGTATGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCTGTATTATTCAATACTTTAGGTCTCCCCATGCGCCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAATTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCTTTGGAGCTTACCCAATGGCTGGATCTTCTCCCTCAACAACTATTTCTGCATCAGGTTTCCCATATGCTGGTGGGTTTCCTGCATGGTCAGTACCGAGAATGTCTTATTTATCCGGGCAGGGTCTTCAATCTTATGTGCCTCCTTTTCTGCCTTCTTCACAAGGCGTTATACCTGCACTGAGCTGGAACAACTACATGGGAAGTATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTCTACGACTACATGAATCCNGGGGAGTCACTTTCTGGTGGCCAGGTAATGAGTTCAACTCTCCCAGATAGACCTGATCAACCAGAATGTAAATACTTTATGAACACTGGGACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCCAAAGAAAGAATAGCCCAATCCTTATCAATAAATCCACTTGGTCTTCCTTTGAGACCCGGGCATGCTGTATGCTCTTACTACAGAGTCAATGGAATATGCAAGTTTGGCCCAACATGCAAATTTGACCATCCAGTTTTGGCTATCCCTCAGAATTATGGCTTGCCCTCACCTGCTCTATCTGTATTTGATGCATCTCTCCTCAGTAATCCAAGAGGGTTGTCGACCGTCCAACCGACNGAGACATCTCCATCTAAATTATCAAGTGACAAGCTTGACCAGCACTCTGATACAAAAGCTGCTACAGAAGATTCATCCAAACAAGCTGATACTACNTCAAGTTCCATCCCATCCTCCTCAGAGTCTTTACATGAATAAACTTATTGAAGTTTGAATCTTTCTTTTGGACCTTTTTTCCACCCCATATTTTCAGGAGAAATATATTATACGTACACCATCTATTCCCCTTTTTTTCACCTGCATTTCTGCTGGGTTGGATAGTTTGTTCAGTGGTTGTTGNTACAATCATGAGCTTGTGGGGGATGGAGGGCATTTTTTTTGTGGTGAATAAAATGCAGGTAGAAAGTTTGTGACTTCCATTTTTTCCTTTTTCCTTTTCTCTCTTGGGGTCAGTTTGATACACATCTACAAATGCTGAGTGAAAATCTCAAGTTTGTAGCAATTCTTGCATGAATAGAGGGTCTATTNTTGGCTACAATCAATCAAAAACTCAAGATACATTAAAATAATAATGAAAGAGGTATGACAATAAATGATGGATTTGTTTTAAACATTATCTTAGGCTTTTGATTGATTGTGCCCAATAAGAATGTGCTTAATGGGAATCTGCTCGCAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	129571	134907	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015874.1	PF00642.19	zf-CCCH	64	89	1.00E-07
Glyur000249s00015874.1	PF00642.19	zf-CCCH	108	132	1.30E-09
Glyur000249s00015874.1	PF00642.19	zf-CCCH	155	177	8.40E-10
Glyur000249s00015874.1	PF00642.19	zf-CCCH	288	313	6.10E-11
Glyur000249s00015874.1	PF00642.19	zf-CCCH	332	356	3.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.459
SRR1783600	control	51.827
SRR1783602	moderate drought stress	39.583
SRR1811619	moderate drought stress	39.341

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.022
DRR006520	Root Summer glycyrrhizin high producing strain	32.995
DRR006521	Root Winter glycyrrhizin high producing strain	66.663
DRR006522	Root Winter glycyrrhizin high producing strain	64.882
DRR006523	Root Summer glycyrrhizin low producing strain	17.102
DRR006524	Root Summer glycyrrhizin low producing strain	16.528
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.201
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.937

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.339
SRR2868004	Drought Stress (root)	21.796
SRR2967015	Control (root)	15.370

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.737
SRR9715740	Leaf	10.577
SRR9715741	Leaf	11.654
SRR9715739	Root	12.094
SRR9715742	Root	29.535
SRR9715743	Root	25.308

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	72.016
SRR8749028	MeJA induced 9h	58.481
SRR8749029	MeJA induced 9h	62.077
SRR8749030	Uninduced	65.354
SRR8749031	Uninduced	62.486
SRR8749032	Uninduced	41.701

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.735
SRR8400027	Control - Root	30.617