Gene detail

Gene detail information of Glyur000249s00015873.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50640.1	3.00E-20	ethylene responsive element binding factor 3
NR	XP_004491090.1	1.92E-75	PREDICTED: ethylene-responsive transcription factor 3-like [Cicer arietinum]
Swissprot	tr\|O80339\|ERF82_ARATH	1.00E-40	Ethylene-responsive transcription factor 3
trEMBL	tr\|V7BB43\|V7BB43_PHAVU	3.00E-75	Uncharacterized protein {ECO:0000313\|EMBL:ESW13656.1}

Sequence

Transcript Sequence

>Glyur000249s00015873.1
ATGTGCGTGTTCAAAAACGCATCTCACCACCACCACCCCCCTATGCGTCGAGGGAGAGGAGGAATCGCGGCGGCAGATCCAACGGCGGAACGCGAATCGATGAGAAGCCCGGCGAAGGAAACGCGATTCCGCGGCGTTAGGAAGCGACCATGGGGCCGATTCGCGGCTGAGATAAGAGATCCGTGGAAGAAAGCACGCGTGTGGCTTGGCACCTTCGATTCCGCGGAGGACGCTGCCCGGGCCTACGATGCAGCGGCCCGTTCCTTCCGCGGGCCCAAAGCCAAGACCAACTTCCCCAGCCCAGCAGGCNCAGGAGGAGAAAACATGGACGACGACTCTCACTCCCCTCAGATTCCCCTTGGGCTTTCCAAGTTCGACCCGGTTCAGGTTAACTGGCCCACCACCAGCGGCATGAGTAGCACCGTCGAGTCTTTCAGCGGGCCTAGGGTTCCTTCTTCGGTTCACCCTCGCAGGCCCGTTAACCCTGTTCCTCTCGACGATTGCCACAGCGATTGCGATTCCTCTTCCTCCGTCGTCGACGATCAGGACTGCGTCCTCACCTCCTCTTTCCGTAAACCCCTCCCTTTCGATCTCAACCTTCCTCCTCCGCCGCCAACCACCACCGCCTCCGATGACGACGACGACGGCTTCACCGCCTTGTGCCTCTGACGGATCTCTGGTATAATCGCCTGATTTTCTCTCTTGTCTTGTTTTTTTTTTCTCGGGAAAATTAATGGTTTTCTGGGAAAGTGAGGGGAGGATTTGATATTTTCAAGAGAAAAAAGGAAAAATCTCTCTCTCACTTTGTTAGATTATTATTATGATGATGATGTTGTAGAGTAATTAATTAATATAGGCATGGCATGGCCATCTGTGGGTTGGTTGGTTATGTGATGATGATGAGTGAAGAANGGTTGTTTCTTCAACTTGGAGGATGATGATGATGGTTGTGTCTGTTGTTGTTGTTGTTGTAAGTTATTTGGATGGATCCTTTATCTCATAGCATTGGACCTATGATGTGATCTTTGAGAGTTTCTCTCTGGATCTGCTTCTTACCTTTTAGAACTTACTCTCTCCTTTTTTTTTTAATTTATCTCTGTGTACAAAAATTATGGCAATCAGATGATAGAATAAATTACATTCTCCTTAATTACACTTTGCTTCTTCTTGTTGATCTTAATATTGTTTAGTCTGCATTGCATTGCATTCCTGTGTTAATTATGTTTNTGAGATAAGAATAAACCCTTTAAGAATTTTAGTTTTTCCAACAGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	123590	125109	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF
EAR motif-containing Proteins	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015873.1	PF00847.15	AP2	41	91	3.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	158.139
SRR1783600	control	164.374
SRR1783602	moderate drought stress	203.063
SRR1811619	moderate drought stress	205.643

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	157.490
DRR006520	Root Summer glycyrrhizin high producing strain	156.850
DRR006521	Root Winter glycyrrhizin high producing strain	235.107
DRR006522	Root Winter glycyrrhizin high producing strain	233.773
DRR006523	Root Summer glycyrrhizin low producing strain	186.421
DRR006524	Root Summer glycyrrhizin low producing strain	190.784
DRR006525	Leaf Summer glycyrrhizin high producing strain	64.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.992

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	129.818
SRR2868004	Drought Stress (root)	147.497
SRR2967015	Control (root)	150.220

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	152.066
SRR9715740	Leaf	149.713
SRR9715741	Leaf	181.323
SRR9715739	Root	288.261
SRR9715742	Root	190.236
SRR9715743	Root	210.874

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	159.341
SRR8749028	MeJA induced 9h	129.661
SRR8749029	MeJA induced 9h	159.798
SRR8749030	Uninduced	80.463
SRR8749031	Uninduced	72.261
SRR8749032	Uninduced	139.822

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	169.399
SRR8400027	Control - Root	172.789