Gene detail

Gene detail information of Glyur000249s00015870

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14180.1	2.00E-57	Myzus persicae-induced lipase 1
NR	XP_004491087.1	1.47E-127	PREDICTED: triacylglycerol lipase 2-like isoform X1 [Cicer arietinum]
COG	YP_007203146.1	3.00E-18	lysophospholipase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q67ZU1\|LIP2_ARATH	6.00E-67	Triacylglycerol lipase 2 (Precursor)
trEMBL	tr\|B9IAL4\|B9IAL4_POPTR	5.00E-113	Lipase {ECO:0000256\|PIRNR:PIRNR000862}

Sequence

Transcript Sequence

>Glyur000249s00015870.1
ATGGCCAAGACATCACTCTCAATAATCCTTGTGATTCTCTTCTTCTGGGGTACTTCAACTATTGCAGCAAGAACACAATTTTCACCCCTCAGCAGTAGAGGAAGTGCTACAAAAGGCTATGCTTGTGAAGAACACTTGGTGACAACACAAGATGGTTACATTCTCAACATGCAGAGAATTCTACCAAGGGGGCCACCAGGCACTAGGATACCGGTTCTGCTACAGCATGGGCTATTCATGGATGGTGTAACATGGTTATTGCTCCCTCCAAGTCAATCTCTTGCATACCTTTTGGCAGATAATGGGTTTGATGTTTGGCTTGCTAACACACGTGGAACCAAATATAGCCGTCAACACGCATCCTTGCCTAGTAATAGCTCGGTTAGTTTTTGTTTGCCATATGTTGCTGCCACTTCTATGGATTATTGGAATTGGTCATGGGATGAATTGGTTGCATATGATCTTCCAGCAACATTCCAGCATGTGCATGATAAAACTGGACAGAAACTTCACTATGTTGGTCACTCACAGGGAACTTTGGTTTTATTGGCTGCTTTTTCCAAAGATAAGTTACTGGATAAGTTGCGATCAGCCGCCTTACTTTGCCCAATTGCTTATGTTGGTGAGATGACCTCACCACTAGCTAAAAATGCTGCTGAAAACTTCATTGCAGAGGTAGTTGTGATCAGACAAGGAACCATTGCAATGTTTGATTATGAGAACACAGATGAGAATACAAAACACTATGGACAGACCACTCCTCCAGTATATGACATGAGACTTCCAAATGATCTTCCCCTATTCCTTAGCTATGGAGGGGCTGATGCTCTTTCCGATGTCAAAGACGTGCAACGTCTGTTGGAAAGTCTCAAAGATCATGATGGAGATAAGCTTGTAGTGCAGTACAGAAATGATTATGCACATGCAGATTATGTTATGGGTGAAAATGCTAAGCGAGATGTATATGAACCTCTTATATCTTTCTTTAGGCTTCAGTGATATATATTTAGAAAAGAATACTCCCTTACGGAATTTTTTATATTACCTGTTTCCATGTCACAAATGAATAGCACAGAAATTTCAGCATGTAATTTTACAGAAGATACTGTTATTAAAGGAAATTCCTATATATTTTTCTGTTTTGTATACATCCCCAGTAGATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	100523	103353	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015870.1	PF04083.11	Abhydro_lipase	38	87	1.40E-16
Glyur000249s00015870.1	PF00561.15	Abhydrolase_1	103	204	2.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.694
SRR1783600	control	4.145
SRR1783602	moderate drought stress	3.188
SRR1811619	moderate drought stress	3.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.636
DRR006520	Root Summer glycyrrhizin high producing strain	3.387
DRR006521	Root Winter glycyrrhizin high producing strain	0.955
DRR006522	Root Winter glycyrrhizin high producing strain	0.981
DRR006523	Root Summer glycyrrhizin low producing strain	5.705
DRR006524	Root Summer glycyrrhizin low producing strain	5.761
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.217
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.204

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.616
SRR2868004	Drought Stress (root)	2.751
SRR2967015	Control (root)	1.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.569
SRR9715740	Leaf	15.134
SRR9715741	Leaf	15.156
SRR9715739	Root	0.320
SRR9715742	Root	2.443
SRR9715743	Root	1.474

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.853
SRR8749028	MeJA induced 9h	1.577
SRR8749029	MeJA induced 9h	1.258
SRR8749030	Uninduced	0.336
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.726

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.377
SRR8400027	Control - Root	3.600