Gene detail

Gene detail information of Glyur000249s00015866

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19650.1	4.00E-139	Mitochondrial transcription termination factor family protein
NR	XP_007141673.1	0	hypothetical protein PHAVU_008G215400g [Phaseolus vulgaris]
trEMBL	tr\|V7B715\|V7B715_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13667.1}

Sequence

Transcript Sequence

>Glyur000249s00015866.1
ATGATTTCCCAGCTGAACCGCTTCTTTCTTTTCCACCCTTCCCTGCATCAACAAAACTCCGTTTCATCCCAAAACCCACCTTCAGTTTTCCTCAAAGTTCAAGCCTTTCGCGGTTCCNAAGCTACCCATGTTCCCGCCATTTCCCCTGTGAACTCTATTCGCGTGTCTCGTTCCGTGAGAANCGAAGCTCAGCATGTTCTAATGGATTACTTGCACTCAACTCGAGGATACAGCTTCTTAGACGCCGAATACATCAGCAAGAACTCCCCCAATTTTGTTGAATCCTTGGTCTCAAAAATCAACCGCCACGACGACGACGTTTCTCACTCGTTGAGGAAGTTCCTCAGGTATAACCCCGTTAACGAGTTTGAACCATTTTTCGAGAGTTTGGGGATTAGCCNTCATGAGTTGCACTTGGTTCTCCCTCGTGACATGATTTATTTAGCCGATGATCATGTTTTGCTTGAAAATTTCCATGTTTTGTGTAACTGTGGTGTCCCGCGAAACAGAATGGGGAAAATTTATAAGGAAGCAAAAGAGGTTTTTGGGTATGATAGGGGATTGTTGTCATTGAAGTTAAAAGCTTATGAGAATTTGGGTTTGAGCAAATCATCTGTAATCAAACTAGTTGTTTGTTGCCCTTCTGTATTGGTTGGTGATGATGTTGTTGATAGTGAGTTTGTTGTTGTTCTTGATTGGTTGAAGAAAATTGGGATTGAGAATGAGTGGATTGTGAATTACATGTCTTGCTCGAGGACATATAGTTGGAAGAGAATGCTTGATACCATACAATTTCTGAATAAGGTGGGCTATTCTGAGAAACACATGCACAATTTGTTTAAGGCTAATCCTAGATTTTTGTTGGAAGGTTTTGGGAAGAAGCTGTACTTGTTTTTGTCCCGGGCAATTAAGTCGGGCGTTCGGATGAATGCGATTTGTTCTTGTTTCGTAGAGTATCCCTATATGATGTCAAATAGGTGTGCAGAAAATCTGTTGAGAGTGATTGGTTTTTTGTATAATGTTGGAATGCGAGAAGATGACATTGCATATGTTTTGTCTAACTACATGCATCTCCTGAGCAAACATTCGGTAAAGGGTCATAAAACTGTTTGTAAGGAGTTAGGAGTTGGAAAAGCTGATTTGTGCCAAATCATAAAGGATGATCCATTGAAGCTGATTAGTTTGGCCTCAAAACCGGAGCAGAAGAGCACTGAACAAGTATGCCGTCATGACCCGCGTAATTATTTGGGAAAAACAACTTTCTTGCTGAAACTGGGGTATACTGAGAACTCTGAGGAGATGGAAAAAGCATTGAAAACATTTAGAGGGAGAGGTGATCAATTACAAGAGAGATTTGATTGCCTGGTAGAAGCTGGTTTGGACTACAACAGTGTGATCGAAATGATAAAGCGAGCTCCTATGATTCTAAACCAGAATAGAACATTGATTCAGAAGAAGATTGATTTCATAAAAGACATTTTAGGTTACCCAGTAGAATGTCTNGTGGGATACCCAACATACTTTTGCCATGATTTGGACAAAATTATTGCAAGATTTTCAATGTATGTGTGGTTGAAGGAGAGGAATGCTATAAATCCTGAGTTNACCTTGAGCACCATAGTTTCAGCTAATGATAAACGGACCAGTTCAGACAGGATAACTGGCTGGCTTTCTTCAAGGATAGCCTTCTTAGTTGGCTTCTATGCAGTATGAATCTCTGAAATGATTTCCNAGCTCAATCAAAACCACCTCTTTCTTTTCGTCCCCGCTACTGCCCATCAAAAATNCCCTGCAACACTAAACCCATCATCTCTCAAAGCTTCAAACTTTGGCGGTTCTAAGGTTTCCCACCTTCTCCAATTGTATTGTATTCAATCATCCAATTCTGTGAGACGGTTATCACGTTCTGCGAGGGCCAAAGTTGAGGATGTGTTGCTAGGTTACTTGCATTGCAGCAGGGGTTACAACTTTATGGATGCCGAGTTCATTAGCAAGAACTCGCCACGTTTCGTTCAAGCGTTGGTAGCAGAGTTACATGGACAAGGTAATGATGATGATGATGATGATGATGTTGTTGTAGGGTCTTTAAGGAAGTTCTTAAGGTACAATCCCATTAATGAATTTGAACCCTTTTTTGAGAGTTTGGGAATAATCCCTCATGAGTTGCCTATGTTTCTGCCACGTGGCATGATGTATTTGTCTGATGATGATGCCTTGCTTCACAATTTCCATGACTTGACTAATAATCATGGTGTCCCAAGGAATAAGATAGGGAAAATCCTTAAGGAGGCAAAGGAGGTTTTTGGGTATCCTAGTGGGTTATTGTCATCCAAATTTCAAGCATATGAAAATTTGGGTTTGAGTAGGTCCATGGTCGTCAAGCTCATTGTTTGTTGCCCTTCACTTTTGATNGGTGAAACTAGCAGTGAATTAGTCCTTGTTCTTGATTGGTTGGAGAGAATTGGTATCGAGCGTGGTTGGATCGGGAATTACTTGTCTTGTTCAAAAACATATGACATGAAGAGAATGCTTGATGCCTTGCAATTTCTTCATAATGTGGGTTGTTCTGAGAAGCAGATGCAGAATTTGTTGAAGGAAAATCCTGCATTGTTGTTGGAAGGTCTTGGGAAGAAGGTGTATGTGTTTTTGGGTTTATCACTTAAATTAGGTCTCAAGAATGTGATTTATTATTTTGTTGTAGAATATCCCCATATCTTGTCTAGTAAGTCTGTAAAAAATCTTTTGAGAGTTGTTGGATTTTTATATTATATTGGAATGGGAACAGGTGATCTTGCACACATTTTGTCTAACCACATGCATCACCTGTGCTCTCACCCCTTGAGAGGCCCTAAAGCTGTTTGTTGTCAATTAAAAGTTAAAAGAGCTGATTTATGTCGAATCATAAAGGATGATCCACTGAAGCTGATTAGTTTGGCTTCAAAATTGAAGCAGAATAGTGCTGTACAGTTAGCTTGTGATGACCCGAGTAAACATTTGGAGAAAACAACATTCTTGCTGAAACTGGGATATGCNGCAGACACTGAGGAGATGGAAAAAGCGGTGAAAAGGTTCAGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGCCTGGTTGAAGCTGGTTTGGACTATGACATTGCCATCAAAATGATAAAACGCGCTCCTATGATTCTAAACCAGAGCAAATTTGTAATTGAAAAGAAGATTGATTTCTTGAGGAACAATTTAGGTTACCCTTTAGAATGTGTAGTGGCATTTCCATCATACTTATGCTATGGTTTGGAGAGAATTGTGCTCAGATTTTCAATGTATGCATGGTTGAAGGGTAGGAAAGCGGTGAATCCTATTTTGAGCTTGAGCACTATTCTTGCATCCTCTGAGGAACGGTTCGTCAAAAGCTTTGTGAATGTGCATCCTGAAGGTCCAATCATCTGGAAAGGTCTGAAGAGTTCATTGCAAAAAGATAAGAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	77490	82875	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015866.1	PF02536.9	mTERF	202	321	5.60E-06
Glyur000249s00015866.1	PF02536.9	mTERF	268	558	2.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.039
SRR1783600	control	1.009
SRR1783602	moderate drought stress	1.445
SRR1811619	moderate drought stress	1.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.459
DRR006520	Root Summer glycyrrhizin high producing strain	1.457
DRR006521	Root Winter glycyrrhizin high producing strain	1.016
DRR006522	Root Winter glycyrrhizin high producing strain	1.019
DRR006523	Root Summer glycyrrhizin low producing strain	1.315
DRR006524	Root Summer glycyrrhizin low producing strain	1.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.524

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.901
SRR2868004	Drought Stress (root)	2.787
SRR2967015	Control (root)	2.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.899
SRR9715740	Leaf	1.695
SRR9715741	Leaf	2.517
SRR9715739	Root	0.306
SRR9715742	Root	1.710
SRR9715743	Root	1.932

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.738
SRR8749028	MeJA induced 9h	3.956
SRR8749029	MeJA induced 9h	3.226
SRR8749030	Uninduced	3.183
SRR8749031	Uninduced	4.781
SRR8749032	Uninduced	3.704

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.406
SRR8400027	Control - Root	2.469