Gene detail

Gene detail information of Glyur000249s00015865

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04570.1	8.00E-108	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_003616836.1	0	GDSL esterase/lipase [Medicago truncatula]
COG	YP_007095445.1	3.00E-16	phospholipase/lecithinase/hemolysin [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9SJB4\|GDL34_ARATH	4.00E-146	GDSL esterase/lipase At2g04570 (Precursor)
trEMBL	tr\|G7K7G4\|G7K7G4_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES99794.1}

Sequence

Transcript Sequence

>Glyur000249s00015865.1
ATGGAAGGGCAGGGAAAGACCCTACTAGTATTATGCTCCCACAACATTGTGTACATTGTCCTCCTCCTCCTCCTCCTTTTGCTTAACAACAACAAGGTGGGTGTTGCTAGTGCTGCAAAGGTACCGGCGATCGTTGTGTTCGGCGACTCGTCGGTAGACGCCGGGAACAACAACTTCATTCCAACGGTTGCAAGGAGCAATTTCCAGCCATATGGGCGTGACTTTTTAGGAGGGAAACCAACTGGGAGGTTCAGCAATGGNAGGATACCAACTGATTTCATATCGGAGTCCTTTGGCATCAAACCATACGTGCCTCCATACTTGGATCCAAAGTATAACATTTCGGATTTTGCCACTGGGCAATTAGAGTACTACAAGGGATACCAAAAGAATCTGAGTGCATACCTTGGTGAGAGCAAGGCAAATGAGATCATAGCAGAATCAGTACACCTCATGAGCCTAGGAACAAATGATTTCCTTGAGAACTACTATGCCATGCCAATGCCTGGAGGAAGGGCATCTCAATACACACCCCAACAGTACCAAACTTTCCTTGCTGGGATAGCTGAGAACTTCATAAGGAACCTCTATGCTCTTGGTGCTAGGAAGATATCCCTTGGAGGGTTACCTCCCATGGGGTGCTTGCCATTGGAGAGGACCACAAACATGTTTGGTGGGAATGACTGTGTTTCCAGATACAATACCATTGCACTTGAGTTCAATGATAAGCTCAAGAATTTAACCACTAAGCTCAACCAGGAGCTACCTGGAATCAGATTGGTGTTTTCAAATCCTTACTACATCATGTTGCATATCATCAGACATCCTGAACTATATGGGTTTGAATCGACTTCAGTGGCATGTTGTGCTACTGGAATGTTCGAGATGGGTTATGCATGCAACAGGGGGAGCATGTTCAGTTGCTCAGATGCTTCCAAATATGTGTTTTGGGACTCTTTCCATCCAACAGAGAAAACCAATAGTATTGTTGCAAACTATGTGGTGCAGCACGTTTTCGCTCAGTTTTCAGAATAATAATAACTAAATGCTACTTCTTGTGGAATTTTATATATGCAATGTCTCGTCACTTTTGCACACTCACCATAAAATGCCATTTGGGCTTTTCTATAAAGGGTTGCAAGTTGATGTGTAATGTATATACAAAAATATTAATACAGCACTTTGATCATCAAATGTGCTGATAATTAAGAAAATAAGTTTTGTTTGGGTTAGGGGTGATATATAGTATTGCTACTTATGCTTTTCAGGCCCCTTTACCTTACAGTATTAGGTTTCCTCTATGTATTCCTCTTCATATATTTGTTCTATGAACTATTACATATGGAGAGCAAGTTGTGTTCTAAGTTTGTAATCTCAACCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	72978	76951	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015865.1	PF00657.17	Lipase_GDSL	44	334	3.40E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.399
SRR1783600	control	1.517
SRR1783602	moderate drought stress	2.859
SRR1811619	moderate drought stress	2.581

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.791
DRR006520	Root Summer glycyrrhizin high producing strain	0.844
DRR006521	Root Winter glycyrrhizin high producing strain	0.878
DRR006522	Root Winter glycyrrhizin high producing strain	0.949
DRR006523	Root Summer glycyrrhizin low producing strain	0.950
DRR006524	Root Summer glycyrrhizin low producing strain	0.959
DRR006525	Leaf Summer glycyrrhizin high producing strain	202.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	200.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.340
SRR2868004	Drought Stress (root)	0.743
SRR2967015	Control (root)	0.411

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	102.573
SRR9715740	Leaf	82.206
SRR9715741	Leaf	72.015
SRR9715739	Root	0.255
SRR9715742	Root	2.115
SRR9715743	Root	3.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.313
SRR8749029	MeJA induced 9h	0.032
SRR8749030	Uninduced	0.198
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.760
SRR8400027	Control - Root	3.702