Gene detail information of Glyur000249s00015864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42990.1 | 4.00E-122 | GDSL-like Lipase/Acylhydrolase superfamily protein |
| NR | XP_003545614.1 | 0 | PREDICTED: GDSL esterase/lipase At2g42990-like [Glycine max] |
| COG | YP_003886809.1 | 1.00E-17 | G-D-S-L family lipolytic protein [Cyanothece sp. PCC 7822] |
| Swissprot | tr|Q67ZI9|GDL48_ARATH | 2.00E-151 | GDSL esterase/lipase At2g42990 (Precursor) |
| trEMBL | tr|I1M7K0|I1M7K0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G05560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00249 | 55328 | 62494 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000249s00015864.1 | PF00657.17 | Lipase_GDSL | 31 | 343 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.064 |
| SRR1783600 | control | 5.089 |
| SRR1783602 | moderate drought stress | 3.495 |
| SRR1811619 | moderate drought stress | 3.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.302 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.434 |
| SRR2868004 | Drought Stress (root) | 4.230 |
| SRR2967015 | Control (root) | 3.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.789 |
| SRR9715740 | Leaf | 2.482 |
| SRR9715741 | Leaf | 4.580 |
| SRR9715739 | Root | 1.416 |
| SRR9715742 | Root | 1.131 |
| SRR9715743 | Root | 1.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.413 |
| SRR8400027 | Control - Root | 24.218 |