Gene detail

Gene detail information of Glyur000249s00015861

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04530.1	3.00E-139	Metallo-hydrolase/oxidoreductase superfamily protein
NR	KHN44739.1	0	Ribonuclease Z, chloroplastic [Glycine soja]
COG	YP_006440111.1	4.00E-51	metallo-beta-lactamase [Turneriella parva DSM 21527]
Swissprot	tr\|Q8L633\|RNZC_ARATH	0	Ribonuclease Z, chloroplastic (Precursor)
trEMBL	tr\|I1M7K2\|I1M7K2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G05580.1}

Sequence

Transcript Sequence

>Glyur000249s00015861.1
ATCAAAACTGCTATTTGGCGAGTTAACNGTTAACCTTATCCTTCTCTACCACACTGTCATCCGGTGGATTGGCCNCAGACAGACACAAACGTTTTCTAAATTCTAAAACCCAGTTTAAACCCTTTTCTCTGTTCTCTCAGCAATGAGTGTCCCACTTCGCCATTTAACTATGCAAATTCCTCTTAGCAATTCAGCCTTCAAGACCCCTCAAATCTTCCCATTTCACCAACCCATTCTCTCTCCAAAGCCACCGAACCACCAAGTCTCATTGCAAACCCACACCAACAACAACGCCCTTAAAGGTTCTTCTGGGTATTTGTCCGAAATCAGCAAGGCAATCGATTACGAGGAACAGTACCGGGTAGCACGGTCACAGGTTAACCGAAAATGTTTGGACTTGGANGGTTATTCCATTGAGGGTCTCTCAATTGGAGGGCAAGAGACTTGTATCATTATCCCTGAGTTCAAGTGCACCTTCGATATTGGGAGGTGCCCAACCAGAGCCATTCACCAAAACTTTGTTTTTATCACTCATGCTCATCTTGATCACATTGGAGGGCTGCCAATGTATATAGCTAGCCGTGGTTTATACAATTTGAAACCTCCCACAGTATTTGTGCCTCCTTGCATCAAAGGGGATGTTGAGAAGCTGCTTGATATTCACAGGACAATGGGCCAAGTTGAACTGAATGTTGAATTGGTTGCTTTAGANGTGGGTATTTTCATTTCAGGGGAGACATATGAATTGCGGAATAACCTTGTTGTTCGGCCATTCAGAACACAACATGTTATTCCCAGCCAGGGTTATGTAGTCTACTCAATCAGGAAAAAGCTGAGGAAACAGTACATGCATCTGAATGGGAAACAGATTGAGAAAATAAAAAAGTCAGGTGTTGAGATTACAGACACTATATTATCTCCTGAGGTGACCTTCACTGGGGATACAACATCAAATTTTATGCTTGACCCACTTAATGCCGATGCATTGAGAGCAAAAATTCTCATAACTGAGGCAACTTTCCTGGATGATTCATTCACCATAGATCACGCTCGCCAACATGGTCATACACATATACTTGAGCTCATTGAAAATGCTCAGTGGATTCGCAACAAAGCAGTTCTGTTGACTCATTTTTCATCAAGATACAATATAGAGGATATTCGTGAAGCTGCATCAAAATTGCAGTCCAAGCTGTCTGCGAAAGTGGTTCCTCTTACAGAAGGCTTCAAATCACAATACTCTTAGGTGTTTCAAAGTCAATTCAAGTATCACCATTATCAATATATCGATGAGTACTGGAAAAAAAAATAGTGTCACCAGTTGTGTCTCCGTTTCATAGTTTCTTGTAAATTAGAGAGAGGTGTACCTGTAATCTTACTATTTTTTTTCCTATGAAATCGAGTTGCACGACTGAGTAGTCACTACCCTATTGTAATTTACNGTTAGTGCAGCGCTAAAGATGCTATATGGCCCAACATTAAGAGTTGGAACTGTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	40898	45185	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00784	rnz	EC:3.1.26.11	RNA transport	map03013

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015861.1	PF12706.2	Lactamase_B_2	123	331	6.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.774
SRR1783600	control	8.551
SRR1783602	moderate drought stress	7.793
SRR1811619	moderate drought stress	7.988

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.596
DRR006520	Root Summer glycyrrhizin high producing strain	7.576
DRR006521	Root Winter glycyrrhizin high producing strain	3.867
DRR006522	Root Winter glycyrrhizin high producing strain	3.573
DRR006523	Root Summer glycyrrhizin low producing strain	3.971
DRR006524	Root Summer glycyrrhizin low producing strain	4.113
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.236

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.415
SRR2868004	Drought Stress (root)	2.479
SRR2967015	Control (root)	2.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.843
SRR9715740	Leaf	13.873
SRR9715741	Leaf	5.943
SRR9715739	Root	1.834
SRR9715742	Root	4.076
SRR9715743	Root	3.222

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.113
SRR8749028	MeJA induced 9h	7.432
SRR8749029	MeJA induced 9h	6.644
SRR8749030	Uninduced	1.839
SRR8749031	Uninduced	1.123
SRR8749032	Uninduced	2.126

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.417
SRR8400027	Control - Root	9.956