Gene detail information of Glyur000249s00015855 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44310.1 | 7.00E-30 | Calcium-binding EF-hand family protein |
| NR | NP_001237975.1 | 7.79E-78 | uncharacterized protein LOC100500687 [Glycine max] |
| trEMBL | tr|C6T2H4|C6T2H4_SOYBN | 3.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G43370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00249 | 7398 | 7805 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000249s00015855.1 | PF13499.1 | EF-hand_7 | 25 | 96 | 7.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.394 |
| SRR1783600 | control | 0.300 |
| SRR1783602 | moderate drought stress | 0.373 |
| SRR1811619 | moderate drought stress | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.516 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.239 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.611 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.651 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.916 |
| SRR2868004 | Drought Stress (root) | 3.351 |
| SRR2967015 | Control (root) | 2.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.258 |
| SRR9715740 | Leaf | 0.250 |
| SRR9715741 | Leaf | 0.135 |
| SRR9715739 | Root | 0.918 |
| SRR9715742 | Root | 2.073 |
| SRR9715743 | Root | 3.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 601.861 |
| SRR8749028 | MeJA induced 9h | 159.429 |
| SRR8749029 | MeJA induced 9h | 601.989 |
| SRR8749030 | Uninduced | 581.908 |
| SRR8749031 | Uninduced | 1242.613 |
| SRR8749032 | Uninduced | 3031.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.365 |
| SRR8400027 | Control - Root | 4.736 |