Gene detail

Gene detail information of Glyur000248s00011325.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23250.1	3.00E-57	myb domain protein 15
NR	XP_007162544.1	4.41E-96	hypothetical protein PHAVU_001G161000g [Phaseolus vulgaris]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	3.00E-70	Myb-related protein Myb4
trEMBL	tr\|V7CYR8\|V7CYR8_PHAVU	2.00E-96	Uncharacterized protein {ECO:0000313\|EMBL:ESW34538.1}

Sequence

Transcript Sequence

>Glyur000248s00011325.1
CACTGAACTTCAAGTTGGTACTTTTTGTACATAAGAGAAAGCCTGGCCTGAGCTTTGGAACAGCCGAAACTAGATTACAATTTGGCTTTGGCAGCTGCAGGGATATTAGTCACAAAGCAAATATGGGGAGAGCTCCTTGCTGCGACAAAATGGGGTTGAAGAAAGGACCATGGACTCCGGAGGAAGATCTCATCCTCATCAATCATATCAACACATTTGGCCACAAAAATTGGCGTGCCCTCCCCAAACAAGCCGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGACAAATTATTTGAGGCCAGACATCAAGCGGGGCAACTTTACCAGAGAAGAAGAGGACACAATANTCAAATTGCATCAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCAAGATTAGCGGGGCGCACAGACAACGAGATAAAGAATGTGTGGCACACCCGCTTGAAGAAGAGGCTGAGGCTGAGGCTGCCGCCACAACAAGAAACAGAAACAGAAACAGAAACAGAGCTTCCCGACAGAAAACCAAATGCGAAACAAATGGACGCCCCAAAGTACAATTACCAACACCCAAGGCCAAAACAAGAACAAGGGCCCGTGAATCAGAATTTCCCCACTACTACTACTGCTACTACTACTACTCATCATGTTGATCATGTGATTATCAAAGCCGAAAGCACTGCAGAGGAAATGCCACTATATTCTTCTCCACGGTGTTTGAGTAGTGACATGTCCACCTTCACCGCTAGTACTGACAGCAACGACCACAACACCAGTACTGTTAATTGTGACGTGTCCTTGAATAGCAACAGTGCTGATTCTTTGGTCGATGATTTCTGGTCCGAAGTTTTGTCAGCTGATAATTCCAATGAGACAAGCGGTTTTCTGGCTATTAATGGTGTTGCCGAACTCATGTTTCCGCTATTGACCGAAGAAGGGGTCCCTGGTTCATCAAGTTTGTGGGATAGCATGGACTTTTGGTATGATTTTCCATGNGTAGCTGAGGAATTGCAAGAATTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00248	211349	213178	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000248s00011325.1	PF00249.26	Myb_DNA-binding	14	61	7.00E-14
Glyur000248s00011325.1	PF00249.26	Myb_DNA-binding	67	110	1.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.232
SRR1783600	control	18.963
SRR1783602	moderate drought stress	20.974
SRR1811619	moderate drought stress	19.696

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.524
DRR006520	Root Summer glycyrrhizin high producing strain	14.279
DRR006521	Root Winter glycyrrhizin high producing strain	0.415
DRR006522	Root Winter glycyrrhizin high producing strain	0.391
DRR006523	Root Summer glycyrrhizin low producing strain	1.055
DRR006524	Root Summer glycyrrhizin low producing strain	0.935
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.956
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.582
SRR2868004	Drought Stress (root)	2.264
SRR2967015	Control (root)	2.321

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.032
SRR9715740	Leaf	0.059
SRR9715741	Leaf	0.158
SRR9715739	Root	2.695
SRR9715742	Root	8.322
SRR9715743	Root	7.387

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.307
SRR8749028	MeJA induced 9h	0.371
SRR8749029	MeJA induced 9h	0.366
SRR8749030	Uninduced	1.284
SRR8749031	Uninduced	10.824
SRR8749032	Uninduced	5.616

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.557
SRR8400027	Control - Root	5.291