Gene detail information of Glyur000248s00011324 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03890.1 | 3.00E-42 | RmlC-like cupins superfamily protein |
| NR | XP_003590689.1 | 0 | Legumin [Medicago truncatula] |
| Swissprot | tr|P02858|GLYG4_SOYBN | 0 | Glycinin B3 subunit (Precursor) |
| trEMBL | tr|G7IEH2|G7IEH2_MEDTR | 0 | Legumin storage protein {ECO:0000313|EMBL:AES60940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 207695 | 210140 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011324.1 | PF00190.17 | Cupin_1 | 67 | 159 | 1.20E-24 |
| Glyur000248s00011324.1 | PF00190.17 | Cupin_1 | 373 | 517 | 1.40E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.535 |
| SRR1783600 | control | 8.444 |
| SRR1783602 | moderate drought stress | 16.934 |
| SRR1811619 | moderate drought stress | 17.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.733 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.468 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.211 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.121 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.298 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.916 |
| SRR2868004 | Drought Stress (root) | 2.327 |
| SRR2967015 | Control (root) | 1.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.419 |
| SRR9715740 | Leaf | 0.703 |
| SRR9715741 | Leaf | 0.705 |
| SRR9715739 | Root | 0.624 |
| SRR9715742 | Root | 6.486 |
| SRR9715743 | Root | 4.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.027 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.342 |
| SRR8749031 | Uninduced | 0.085 |
| SRR8749032 | Uninduced | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.626 |
| SRR8400027 | Control - Root | 6.026 |