Gene detail

Gene detail information of Glyur000248s00011320

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06190.2	2.00E-33	Rho termination factor
NR	XP_003537022.1	0	PREDICTED: rho-N domain-containing protein 1, chloroplastic-like [Glycine max]
Swissprot	tr\|Q94K75\|RHON1_ARATH	9.00E-54	Rho-N domain-containing protein 1, chloroplastic (Precursor)
trEMBL	tr\|I1L8E4\|I1L8E4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G04310.1}

Sequence

Transcript Sequence

>Glyur000248s00011320.1
AGTTGCAAATTGCAGTTGTTGGCAGGAAAAGAAGAGAACAAGTATAATATGCAAAACCGACATTGAGTGAGTGTTGGATTGTTGTTGTTGTGAATTGCCAAACAATGTCGCAAACGGTGCATCTCCTCGTCGCCAATAACGTTGGTTGTGGAATGCCAGAAGGCAAGTGTCTCCCATGTTCTGGTGTTTCTGGAAGAACAACTGCTGTATACTCACGCCCTTCTCTAAGTCATCATAGAACACATTCACGTGTCAAAATTAGAGGACTAAAGTGTGGTTCTATGGCTGCATCTTTTGTATGTGAAGCAAAGAGGAACCCGGATTTCTCAAGGCAAAACAAGAATGGGCCCTCCAGAAGCAGGAAAAGGATCACTGATGGGAGAGATGGCTTTGAGAATTTTGAAGAAGATATGTTATCTTCAAAAAATGGACCATTGGTGTCTCTTTCTACCTCAGGAAAATTCCAGGCTACTTCAGCCCCTGGCCCAAGGGAGAAGGAGATTGTTGAACTATTTAGGAAGGTTCAGGCACGGCTGCGTGAGAGGGCTGCTGTCAAAGAAGAAAAGAAAGTTGAAGCCGCGCAAGAGCACGGTAAAGAGAAAAGGACTGTAGATTCCCTCCTCAACCTACTGAAGAAACACTCGGCCAAGCAAGTAAAGAGAAGCAGTGGAGGAGATAGAGGAAAAGATCTTAATTCGGACCAATTGCAAGAAAGTAACCAATATGATGGAGGACGAAACACTAAAATTTCTGATTCGAATAGTGCTCCAAAGGATGAGTCCCGAGAAGCCAACATCACATCTGTAGCTAGGCCTCGGTCAAATTTCCAAAGAAGGTCTCCTATTTCACGTGTAAAGTACCAGCCTGTCTCTAAGTATGAGGATGATATTAGCCCAAGGCCAGTAGGTAGTGGAGATAATGAGAACAATAAGGATCAAATAGATTTGAGCCCNGAGAACGAACCCGAACCTGACCCTGAATCTGATCTTGATACAAAGGATGAGCTGTTCTTCCCAGATATTGGGATTGCTGAATTGTCAGAGGATGATTCTCATGATTCTGAGCAAACCTATAATGATGAGAGTGTGGAAGAGCCGCTAGTGGTTCAACATGAGGATTTGAGTGCACTGAAGTTGTCTGAANTGAGGGCACTTGCAAAGTCTCGTGGCCTAAAAGGGTTCTCAAAAATGAAGAAGGGTGAGCTTGTGGAGCTACTATCTGAGAGCTGATTCTGACAGAATGGTATGAGAAGAGAAGAAAAAGGAACACTAGAACAGATAAAAACAGATTCATTTTACTTTTAACCCGATATTTCTTTGTGCTGTTCCTTTTTTTTATTTTTACTTTTAATCTATAAATCTTCCAATCCAAATACCTGAGGTTGAGTGTTTGTGGATCATTGGAGTAATGCCTTGTAGGATTGTTAAATTTTTTAATTGTGTTCCCATTATGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00248	171315	174283	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006353 DNA-templated transcription, termination

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000248s00011320.1	PF07498.7	Rho_N	338	369	2.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.800
SRR1783600	control	13.780
SRR1783602	moderate drought stress	10.997
SRR1811619	moderate drought stress	11.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.274
DRR006520	Root Summer glycyrrhizin high producing strain	10.204
DRR006521	Root Winter glycyrrhizin high producing strain	11.559
DRR006522	Root Winter glycyrrhizin high producing strain	11.441
DRR006523	Root Summer glycyrrhizin low producing strain	7.595
DRR006524	Root Summer glycyrrhizin low producing strain	7.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.209
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.656
SRR2868004	Drought Stress (root)	12.201
SRR2967015	Control (root)	10.810

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.611
SRR9715740	Leaf	28.220
SRR9715741	Leaf	16.897
SRR9715739	Root	1.995
SRR9715742	Root	5.798
SRR9715743	Root	5.609

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.158
SRR8749028	MeJA induced 9h	11.303
SRR8749029	MeJA induced 9h	11.924
SRR8749030	Uninduced	4.721
SRR8749031	Uninduced	4.890
SRR8749032	Uninduced	3.853

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.251
SRR8400027	Control - Root	14.190