Gene detail information of Glyur000248s00011317 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31160.1 | 5.00E-64 | Protein of unknown function (DUF640) |
| NR | XP_002306857.2 | 3.24E-93 | hypothetical protein POPTR_0005s24730g [Populus trichocarpa] |
| Swissprot | tr|O82268|LSH3_ARATH | 3.00E-85 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 |
| trEMBL | tr|A9PEU5|A9PEU5_POPTR | 1.00E-93 | Uncharacterized protein {ECO:0000313|EMBL:EEE93853.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 146909 | 148626 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011317.1 | PF04852.7 | DUF640 | 39 | 166 | 9.20E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.314 |
| SRR1783600 | control | 16.261 |
| SRR1783602 | moderate drought stress | 31.086 |
| SRR1811619 | moderate drought stress | 31.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.270 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.531 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.439 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.189 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.352 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 7.155 |
| SRR9715742 | Root | 17.848 |
| SRR9715743 | Root | 16.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.671 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.677 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.060 |
| SRR8749032 | Uninduced | 0.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.087 |
| SRR8400027 | Control - Root | 3.857 |