Gene detail information of Glyur000248s00011316.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28530.2 | 1.00E-16 | NAC domain containing protein 74 |
| NR | XP_004495089.1 | 1.22E-36 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Cicer arietinum] |
| Swissprot | tr|Q9FFI5|NAC86_ARATH | 4.00E-15 | NAC domain-containing protein 86 {ECO:0000312|EMBL:AED92405.1} |
| trEMBL | tr|A0A072VLL3|A0A072VLL3_MEDTR | 3.00E-35 | NAC transcription factor-like protein {ECO:0000313|EMBL:KEH42511.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 129686 | 134703 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011316.1 | PF02365.10 | NAM | 10 | 60 | 3.10E-13 |
| Glyur000248s00011316.1 | PF00081.17 | Sod_Fe_N | 74 | 123 | 0.00023 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.390 |
| SRR1783600 | control | 4.776 |
| SRR1783602 | moderate drought stress | 6.442 |
| SRR1811619 | moderate drought stress | 6.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.499 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.916 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.636 |
| SRR2868004 | Drought Stress (root) | 5.518 |
| SRR2967015 | Control (root) | 7.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.213 |
| SRR9715740 | Leaf | 0.809 |
| SRR9715741 | Leaf | 1.617 |
| SRR9715739 | Root | 5.866 |
| SRR9715742 | Root | 13.215 |
| SRR9715743 | Root | 12.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.536 |
| SRR8749028 | MeJA induced 9h | 1.020 |
| SRR8749029 | MeJA induced 9h | 0.932 |
| SRR8749030 | Uninduced | 0.064 |
| SRR8749031 | Uninduced | 0.210 |
| SRR8749032 | Uninduced | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.751 |
| SRR8400027 | Control - Root | 8.721 |