Gene detail information of Glyur000248s00011309.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18760.1 | 0 | chromatin remodeling 8 |
| NR | XP_004495082.1 | 0 | PREDICTED: DNA repair protein rhp26-like [Cicer arietinum] |
| COG | YP_008150051.1 | 6.00E-77 | hypothetical protein SCE1572_18175 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9ZV43|CHR8_ARATH | 0 | Protein CHROMATIN REMODELING 8 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|I1LYM1|I1LYM1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G18650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 78166 | 84797 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011309.1 | PF00176.18 | SNF2_N | 403 | 725 | 2.40E-63 |
| Glyur000248s00011309.1 | PF00271.26 | Helicase_C | 778 | 857 | 7.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.838 |
| SRR1783600 | control | 5.825 |
| SRR1783602 | moderate drought stress | 7.153 |
| SRR1811619 | moderate drought stress | 7.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.960 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.824 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.930 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.247 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.164 |
| SRR2868004 | Drought Stress (root) | 13.787 |
| SRR2967015 | Control (root) | 13.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.433 |
| SRR9715740 | Leaf | 6.239 |
| SRR9715741 | Leaf | 5.227 |
| SRR9715739 | Root | 0.794 |
| SRR9715742 | Root | 7.554 |
| SRR9715743 | Root | 6.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.287 |
| SRR8749028 | MeJA induced 9h | 10.031 |
| SRR8749029 | MeJA induced 9h | 6.314 |
| SRR8749030 | Uninduced | 4.977 |
| SRR8749031 | Uninduced | 4.811 |
| SRR8749032 | Uninduced | 3.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.625 |
| SRR8400027 | Control - Root | 15.138 |