Gene detail information of Glyur000248s00011305 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54220.1 | 3.00E-107 | GRAS family transcription factor |
| NR | AGH06162.1 | 0 | GRAS transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9M384|SCR_ARATH | 4.00E-134 | Protein SCARECROW |
| trEMBL | tr|I1LYM4|I1LYM4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G18680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 56597 | 58503 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011305.1 | PF03514.9 | GRAS | 152 | 514 | 4.00E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.858 |
| SRR1783600 | control | 3.852 |
| SRR1783602 | moderate drought stress | 8.489 |
| SRR1811619 | moderate drought stress | 8.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.379 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.913 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.548 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.645 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.787 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.564 |
| SRR2868004 | Drought Stress (root) | 8.769 |
| SRR2967015 | Control (root) | 2.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.415 |
| SRR9715740 | Leaf | 1.412 |
| SRR9715741 | Leaf | 4.176 |
| SRR9715739 | Root | 1.445 |
| SRR9715742 | Root | 5.414 |
| SRR9715743 | Root | 3.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.481 |
| SRR8749029 | MeJA induced 9h | 0.503 |
| SRR8749030 | Uninduced | 0.633 |
| SRR8749031 | Uninduced | 1.910 |
| SRR8749032 | Uninduced | 1.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.333 |
| SRR8400027 | Control - Root | 11.234 |