Gene detail

Gene detail information of Glyur000248s00011303.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28540.1	0	casein kinase I-like 6
NR	KHN48927.1	0	Casein kinase I isoform delta-like [Glycine soja]
COG	YP_632759.1	2.00E-15	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	7.00E-179	Casein kinase I isoform delta-like
trEMBL	tr\|I1LYM5\|I1LYM5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G18690.1}

Sequence

Transcript Sequence

>Glyur000248s00011303.1
CTTCTCTTTCACTTTCTCTCTGCTCTTTCTCTCTCTTCACACCAAACCAGACCCACTTCCTCCGTTCATCTCCCAACTTTGTGATTTGTGGAACTACTTTTGTCCCTTCCTCTTTGATCCAGCACAGCCTCCTCTTTGTTATTCTGTTTTGCAAAAAAAGCTCAATTTTTTCTCTCCTTATGTGGTTCCTGNCCTTAGCCCCTTAAGCATTCTGTTTCTCTTTTTTTCCTTGGGTCATTGAGGTCATATTTTCTGGAAATAAGGGCTTCAGTTCATGTGGTTTGGGGATGATTGGTTTGGGTTACTTGGGNTGAAGGAATGTAGTTGGAGGAGGTGATTCTTCTGAATAAGAATTCCATCCTCATTGGTGGGGATGTTACAAATTTCATAAATTTGATTCATTCTCATTACCCCTTGTCCTGTATTTATGCTATTCATCAATTTCACTTTTAATCTGATGACTAGATTGTGAAATCTCATTGGGTTTGGGTGGATTTTAGAAAAAAGTTGGAATTTTTGACTCAGTAAAGGCCATTGCAGCTGAAGGTCATTTTATTATGGATCATGTGATTGGTGGCAGGTTTAAACTGGGAAGGAAAATTGGGAGTGGTTCTTTTGGGGAGCTCTATTTAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGACATCCACAGCTTCAATATGAGTCAAAACTGTATATGATTTTTCAAGGAGGAACGGGGGTTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAGTTCACATTGAAGACAGTGCTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTGATGGGCCTTGGACTATACATTATGCTGCGTATCTCATTTCAGGTGTACATCATTGACTATGGCCTTGCGAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATNAGTGAGACAAAGGTGTCAACGCACATNGAGGTTCTCTGCAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCNTTGAGGTTTGAGGACAAGCCAGATTATTCATATCTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGTANGAGCTATCAATTTGATTATGTTTTTGACTGGACTGTTTTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGAGGCATGGCACTGGCAAGGCAGCAATGAATGTGGGTCCACCTCTACAAAGACAAGAAAGGATCTCAGTCGGGAAAGAGATTCGAGAGAAATTATCTGGTGCTGTCGAAGCATTCTCCCGGAAGAACCACACAAGTTCTAGTCCTCATGTTGATTACACCAGACNCAGGACTTTTGAGGATGTGGCAGTGCACAAGGATCCGCACTATGCCCAACACAATTCAACTCGATATGGCAGCAGTTCAAGAAGAGCCATGATCACATCGAACAGGCAAACTTCCTCAGGTGACCATACTGGAAGGCTGACCTCAAGTGGGGCCCGTCCATCGACCACACATAGAATTCAACCTGTGTATGAGACCAAACAAGCAACTTATNCGCGCAACGGGTCTATGAGAGGCAATCGCGATGATCCTCTGCGGAGCTTTGAGCTCCTCAATATCAGGAAGTAATTACAGGGTGTGTCTTTTTTGTTGTCATTTCTAAATTTTGACACACCTGAAGATGCNACATCAGCTCTTGTTCAAGAACAACCTCAACCCTTTTGCAAAGGAACCAACGAATCAAGTTCATGGATATTACTGAATTATCATTGAGGTCATAATGGCATGACCTTCTGATGTCATTTTTGGATCAAGGTTGGACCTTTTTCTGTCACCAGAAGATTTCTTAGCCACTGTAATGTGTTTGTAAAACGTGCCAAAGATATCAAAGATATATAATCCAACTAAGATTCTTTATATACTTAAGTATTGTACTAGATNAAACTTGAGTTGTAAGTTTTGTGATGCACAATGTTATTGTTTGTTGAACGATGAGGTCNAACAAGGCTACTGTACTGTATGATCGTTTAAATTTAATGCAGTCAGTATAAGGAGCAATGAATGATATGGTGCCGTAGGATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00248	46127	52327	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000248s00011303.1	PF00069.20	Pkinase	9	255	2.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.377
SRR1783600	control	29.423
SRR1783602	moderate drought stress	23.640
SRR1811619	moderate drought stress	23.467

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.795
DRR006520	Root Summer glycyrrhizin high producing strain	46.559
DRR006521	Root Winter glycyrrhizin high producing strain	37.254
DRR006522	Root Winter glycyrrhizin high producing strain	35.913
DRR006523	Root Summer glycyrrhizin low producing strain	41.529
DRR006524	Root Summer glycyrrhizin low producing strain	41.460
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.983

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.701
SRR2868004	Drought Stress (root)	51.607
SRR2967015	Control (root)	46.531

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.697
SRR9715740	Leaf	24.040
SRR9715741	Leaf	31.356
SRR9715739	Root	8.876
SRR9715742	Root	21.483
SRR9715743	Root	20.599

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.060
SRR8749028	MeJA induced 9h	30.942
SRR8749029	MeJA induced 9h	26.121
SRR8749030	Uninduced	22.310
SRR8749031	Uninduced	25.315
SRR8749032	Uninduced	19.032

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.757
SRR8400027	Control - Root	47.760