Gene detail

Gene detail information of Glyur000248s00011302

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03950.1	3.00E-76	vacuolar protein sorting-associated protein 2.3
NR	XP_007162562.1	6.20E-137	hypothetical protein PHAVU_001G162400g [Phaseolus vulgaris]
Swissprot	tr\|Q941D5\|VPS2C_ARATH	5.00E-121	Vacuolar protein sorting-associated protein 2 homolog 3
trEMBL	tr\|V7D059\|V7D059_PHAVU	2.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:ESW34556.1}

Sequence

Transcript Sequence

>Glyur000248s00011302.1
AAAATAAATACTGTTTACTCCAAGTTAGTGGGTGTTTGTTGTGTGGGTTGGGTTGGGTTGGGGTTGAGACTTGAGAATCAGAGTGTGAACAATTGTGAAAGCACTTGGAACATTCGCTTTGACGAAGATCACCGATNCGATGAAGAATATCTTCTCCAAGAAACCAACGCCCAAAGAGGCCCTTCGAGAGAGTAAACGAGAAATGGCAAACGCCACTAGAGGTATAGAGAAGGAAATTGGAGCATTACAACTGGAAGAAAAGAAGCTAGTTGCTGAGATAAAGAGAACTGCAAAGACGGGAAATGAGGCCGCAACTAAAATTCTAGCGCGCCAGTTGGTCAGGCTTAGGCAGNAAATTGCTAATCTTCAAGGCAGTCGAGCTCAGATGAGAGGCATTGCAACTCACACGCAGGCAATGTATGCTCAGTCTTCTGTTTCCGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGCACCTGCAAAGCAAGCCAAAATTATTCAAGAGTTCCAGAAACAATCAGCGCAAATGGATATGACCACTGAAATGATGTCAGATGCCATAGATGATGCCTTGGATAATGATGAAGCTGAAGAGGAGACAGAAGAGCTGACAAATCAGGTGCTCGATGAAATTGGCGTTGATGTTGCCTCACAGTTATCAGCAGCTCCCAAAGGGAGAATCAAAACAAAGAATACTGAAAATGTCAGCAGCTCGGGCATTGATGACATTGAGGAGCGTTTGGCAGCTCTTAGAAACCCATAATTTTTAGTCTGGGATTGTGATTCTCAAACTCATTTGTAAACTAGAATGGTTTCCAGAACTCCCATGTTTTCTTGGGATTTCAGAAGTTCAATGTGTATATCCTCCTTTGAAATTATTGATGTTTTTTTATTAAATTTTCACGTGCATGAGGCTAGGGCAATCTAGTGGAGTGGATTCTAAACTGGGATATCCATTTACTTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00248	42626	45784	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007034 vacuolar transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000248s00011302.1	PF03357.16	Snf7	17	186	9.40E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.564
SRR1783600	control	9.537
SRR1783602	moderate drought stress	7.239
SRR1811619	moderate drought stress	7.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.532
DRR006520	Root Summer glycyrrhizin high producing strain	13.500
DRR006521	Root Winter glycyrrhizin high producing strain	2.026
DRR006522	Root Winter glycyrrhizin high producing strain	1.755
DRR006523	Root Summer glycyrrhizin low producing strain	8.273
DRR006524	Root Summer glycyrrhizin low producing strain	8.278
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.527
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.528

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.433
SRR2868004	Drought Stress (root)	20.957
SRR2967015	Control (root)	24.078

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.103
SRR9715740	Leaf	12.299
SRR9715741	Leaf	12.365
SRR9715739	Root	2.980
SRR9715742	Root	6.155
SRR9715743	Root	5.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.853
SRR8749028	MeJA induced 9h	6.151
SRR8749029	MeJA induced 9h	10.498
SRR8749030	Uninduced	3.166
SRR8749031	Uninduced	2.414
SRR8749032	Uninduced	1.971

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.033
SRR8400027	Control - Root	22.339