Gene detail information of Glyur000248s00011301 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20440.2 | 3.00E-158 | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| NR | XP_003536945.1 | 0 | PREDICTED: TBC1 domain family member 15-like isoform X1 [Glycine max] |
| trEMBL | tr|K7LHB7|K7LHB7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G04440.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 34144 | 40335 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011301.1 | PF00566.13 | RabGAP-TBC | 193 | 343 | 4.30E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.448 |
| SRR1783600 | control | 3.477 |
| SRR1783602 | moderate drought stress | 3.378 |
| SRR1811619 | moderate drought stress | 3.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.609 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.410 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.085 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.008 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.648 |
| SRR2868004 | Drought Stress (root) | 16.672 |
| SRR2967015 | Control (root) | 17.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.963 |
| SRR9715740 | Leaf | 7.341 |
| SRR9715741 | Leaf | 5.280 |
| SRR9715739 | Root | 3.554 |
| SRR9715742 | Root | 4.708 |
| SRR9715743 | Root | 5.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.629 |
| SRR8749028 | MeJA induced 9h | 3.093 |
| SRR8749029 | MeJA induced 9h | 1.697 |
| SRR8749030 | Uninduced | 2.909 |
| SRR8749031 | Uninduced | 1.562 |
| SRR8749032 | Uninduced | 2.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.258 |
| SRR8400027 | Control - Root | 10.464 |