Gene detail

Gene detail information of Glyur000247s00015520

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74790.1	0	catalytics
NR	XP_004508796.1	0	PREDICTED: HIPL1 protein-like isoform X1 [Cicer arietinum]
COG	YP_006527824.1	7.00E-58	protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase [Melioribacter roseus P3M-2]
Swissprot	tr\|Q9SSG3\|HIPL1_ARATH	0	HIPL1 protein (Precursor)
trEMBL	tr\|V7CB37\|V7CB37_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27354.1}

Sequence

Transcript Sequence

>Glyur000247s00015520.1
CACTAATGCTTTTGGACCATGTTCTGGGATGTATGTGAATTGAATATGTTAGTGTTGTAGTACAGTTACATTAGGCTTTCAACTGGGTTTGGCGCCATGAAGGGTGTTCTTTCCATTGTCTTCTTGCTTTGTTGCTCCCTGCTACTTTTGGATTCTTCAACTTCACTCCCTCTATGCGTTGATTCAAGGGCACCCTTTACCCTCAATACCACACTCGAATTTTGCCCTTACAACGGAAGCACCTGTTGCAACTCCACAGAAGATGCACAGATACAGAAGCAATTCCAACTGAAGAACGTGTCTGATGCTGACTGTGCCTCCCTTTTGAAATCAATACTTTGTGCGAGGTGTGACCCTTTTTCTGCGGAGCTATTTACAGTTCAATCCACGCCCAGATCAGTTCCTGTGCTTTGCAGTTCTGCCATTCCAACAAATTCTTCCCAGTCAAAGGCATCAGTGCAGGACTTCTGCAGTGAAGTATGGGATACATGTAAAACTGTGTCAATAACAAACTCACCATTTTCCCCTTCATTACAAGGTCAAGGAGGAGGCCTCCAAGTTAATACCAATGCAACAAAACTGACTGAATTATGGCAGTCCAAAACAGATTTTTGTGATGCATTTGGTGGATCCTCCAATAATGAATCAGTATGCTTTGAAGGGGAACCTGTTGCATTAAATAACACCAAGACTCCCATCAACCCCCCTCATGGCTTGTGCCTTGAGAAAATTGGGAATGGATCTTATCTCAATATGGTTGCTCACCCTGATGGCTCTAACCGTGCATTCTTCTCTAACCAAATGGGTAAAGTTTGGTTGGCAACTATTCCTGAAGAGGGTTCAGGTGGACAATTGGAGCTTGATGAATCAAGTCCCTTTGTTGATCTAACTGATCAAGTTTATTTTGATACTCAGTTTGGAATGATGGGCATGGCTTTTCATCCAGATTTTGCAAACAATGGCCGATTCTTTGCTTCATTTAACTGTGATAAAGATAAGTGGTCAGGATGTAATGGAATATGTTCTTGTAACTCAAATGTTAATTGTGATCCATCAAAGCTAGGTACTGCTAATGGTGCTCAACCATGTCAATATCAAACTGTTATTGCAGAATATACTGCTAATGCCACTGCATCTCGGCCATCCTCGGCTGAAAGTGCTAAACCAACAGAGGTGAGGAGGATATTTACCATGGGCCTCCCATTTACATCTCAACATGGAGGTCAGATACTCTTTGGACCTAATGATGGGTATATGTACTTCATGACGGGAGATGGAGGAGGTTCAGGTGATCCATACAATTTTGCCCAAAACAAGAAATCATTGCTTGGAAAGGTTATGAGGCTTGATGTAGACAACATTCCAAGTGCATCAGAAGTTAGCAAACTTGGCCTTTGGGGTAGGTACTCCATTCCCAAGGATAATCCATTCNGTGGAGATAAAGATCTGCAGGCTGAAATATGGGCATTGGGATTAAGAAATCCTTGGCGATGCAGTTTTGATTCAGAAAGACCTTCCTACTTTTTTTGTGCAGATGTTGGAGAGGATCTTTACGAGGAGGTTGATCTCATCACAAAAGGTGGAAACTATGGCTGGCGTGTTAATGAGGGACCCTATCTATTCAGTCCTACAGAGTCACCTGGAGGCAATACCTCCCTTCATTCCATAAATCCAATTCCACCCATATTGGGATACAACCATTCCGAGGTAAACAAGAATGAAGGGTCAGCATCTATCACTGGGGGGTATGTCTATCGATCTAGGACTGATCCTTGCATGTATGGAAGGTACCTGTATGCTGATCTTTATGCAGGTGCAATGTGGGCAGCCATTGAAGACCCTGAAAACAGTGGAAATTTCAACACTAGCAGAATCCCTTTCAGTTGTGCTCNTGATTCTCCCATCCAATGTGACTCAGTACCTGGTAGCTCCCTTCCAGCTCTGGGATACATCTATTCATTTGGGCAAGACAACAGCAAAGATGTCTATATTCTTGCAAGTACTGGTGTTTACCGAGTTGTTCCTCCAAGTCGCTGCAGTTACACTTGCTCACTGGAGAAGGCAACAACTACTACTACTCCTTCTCCTTCTCCTTCTCATGCAAGCCATTGGAGTAACTTTTATGGATTCCTGTTTCTGCAGCTTTCATCTTTCTTGTTGCTTTTCATGGGTTTTATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	219390	223010	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015520.1	PF07995.6	GSDH	220	504	4.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.454
SRR1783600	control	1.444
SRR1783602	moderate drought stress	1.039
SRR1811619	moderate drought stress	1.056

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.734
DRR006520	Root Summer glycyrrhizin high producing strain	1.701
DRR006521	Root Winter glycyrrhizin high producing strain	0.358
DRR006522	Root Winter glycyrrhizin high producing strain	0.348
DRR006523	Root Summer glycyrrhizin low producing strain	0.650
DRR006524	Root Summer glycyrrhizin low producing strain	0.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.894
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.887

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.121
SRR2868004	Drought Stress (root)	77.911
SRR2967015	Control (root)	94.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.232
SRR9715740	Leaf	5.671
SRR9715741	Leaf	12.113
SRR9715739	Root	7.686
SRR9715742	Root	12.195
SRR9715743	Root	10.816

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.678
SRR8749028	MeJA induced 9h	51.563
SRR8749029	MeJA induced 9h	36.041
SRR8749030	Uninduced	13.186
SRR8749031	Uninduced	21.074
SRR8749032	Uninduced	20.405

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.024
SRR8400027	Control - Root	18.379