Gene detail

Gene detail information of Glyur000247s00015517

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40010.1	4.00E-164	AAA-ATPase 1
NR	XP_003622403.1	0	AAA-ATPase 1-like protein [Medicago truncatula]
COG	YP_007098995.1	7.00E-28	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|O19922\|FTSH_CYACA	2.00E-13	ATP-dependent zinc metalloprotease FtsH {ECO:0000255\|HAMAP-Rule:MF_01458}
trEMBL	tr\|A0A072UQF5\|A0A072UQF5_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:KEH31887.1}

Sequence

Transcript Sequence

>Glyur000247s00015517.1
ATGATGCCCCTCAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCCAGCTTCATGTTCATATGGGCGATCATAAGACAATACTGTCCATACGAGGTTACACGTTTCTTGGAGAAGTACACACACAGAATCATGGGCTATTTCTACCCTTACATTCGCATCTCCTTCCACGAATTCTTAGGAGACAGGCTCAAAAGAAGTGAGGCCTATGCAGCTGTGGAGGCATACCTTAGTGCCAACACATCAAAGAGTGCAAAGAGACTCAAAGCTGAGATGGGTAAAGACAGCACCAACTTGGTGTTAACCATGGATGAATACGAGAGAGTAACAGATGAGTATAAAGGTGTCAAAGTTTGGTGGGTTTGTAACAAGGTTATGTCACCAGCAAGGTCCATGTCTTACTCTTATTATCAAGAGCAAGAGAAAAGGTTCTACAAGCTCACTTTTCATAAGAAGTATAGGGACACAATCACGGGTTCATATTTGGAGCATGTGATGAGTGAAGGGAAAGAGATTCGTTTGANGAACAGGCAGAGGAAGTTGTACACAAATAGCCCTGGTTACAAGTGGCCAAGTTACAAGCAAACGATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACGTTTGAGACAATGGCCATGGAACCTGAGAAGAAAAAGGAGATCATCGAGGATTTGGTTACTTTCAGCAAAAGCAAGGATTTTTATGCAAGGATTGGGAAGGCTTGGAAGAGGGGTTACCTCCTTTATGGCCCTCCTGGTACTGGCAAGTCCACCATGATTGCTGCAATGGCTAATTTATTGGCCTATGATGTCTATGACTTGGAGCTCACTGCTGTGAAGGACAACACTGAGCTGAGGAAGCTTCTTATTGAGACAACTAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCACTTGATCTTACAGGTCAGAGGAAGAAGAAAGCAGAAGATGAAAATGATAGTAAGGTGAATAATTGTGATGTTGTTGGAAGAAAAGAAGCCAAGGAAGAAGGGAGCAACAACAGTAGCAAGGTGACACTTTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGCGGAGGGGAGAGGTTGATTGTGTTCACTACTAACTATGTGGAGAAGCTTGACCCTGCACTCATTAGAAGGGGTAGAATGGACAAGCATATTGAGCTCTCCTACTGCAGTTTTGATGGGTTTAAAGTGCTTGCTAATAACTACTTGAGGCTTGAGGATCATCCATTGTTTGACACAATTCAGAGGCTGATAGGGGAGGTCAAGATCACACCAGCTGATGTTGCTGAGAGCCTTATGCCAAAGTCTCCACTGGATGATGCAGATAAGTGTCTTTCAAACTTGATTGAAGTGCTTCAGGAAGCAGCAGCAGCAGCAGATGCTACAAAAGATGAGAAGCTGAGACAGACTAGTCCCATTATTAAGGAAGAAGATGAGGAATTGGAGGAAAACAGTAGTAGTCCCATTAAGGAAAATGGTAACTTTGAAGGTCACAAAGAGACTGATCAAGCAATGAACCAAATCCAGCGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	204213	205778	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015517.1	PF14363.1	AAA_assoc	30	124	2.90E-24
Glyur000247s00015517.1	PF00004.24	AAA	250	399	2.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.936
SRR1783600	control	33.815
SRR1783602	moderate drought stress	35.239
SRR1811619	moderate drought stress	33.875

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.605
DRR006520	Root Summer glycyrrhizin high producing strain	10.384
DRR006521	Root Winter glycyrrhizin high producing strain	0.317
DRR006522	Root Winter glycyrrhizin high producing strain	0.342
DRR006523	Root Summer glycyrrhizin low producing strain	1.839
DRR006524	Root Summer glycyrrhizin low producing strain	2.082
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.237
SRR2868004	Drought Stress (root)	20.642
SRR2967015	Control (root)	25.978

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.518
SRR9715740	Leaf	0.416
SRR9715741	Leaf	0.584
SRR9715739	Root	1.216
SRR9715742	Root	5.013
SRR9715743	Root	4.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.042
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.359
SRR8400027	Control - Root	6.960