Gene detail

Gene detail information of Glyur000247s00015515.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G74800.1	Galactosyltransferase family protein
NR	XP_004508800.1	PREDICTED: probable beta-1,3-galactosyltransferase 19-like [Cicer arietinum]
Swissprot	tr\|Q9LV16\|B3GTJ_ARATH	Probable beta-1,3-galactosyltransferase 19
trEMBL	tr\|K7KMM0\|K7KMM0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01570.2}

Sequence

Transcript Sequence

>Glyur000247s00015515.1
CATCAGATCACTCACTCACACTCACTCACACTCGGGTGTTATTTGATTTGTTACTATTTGTGAGCAAAATCTCTTTGTGATCAATGACGATGTATCCCGAATCGNGTTCTTTGTTCGTGGTTAGGTAAAACAAATCAAGCATGGGTTATGACTATGAGAACCCAAGTCCAAGTCCAAATCCATTTTCATCATCCCCAATTTCAAAATTTCAAATCCATCTTCCCACTCCATCATACTATATATCATCACCTGCCACTACCAAACCGAAACCGAAACCGAATTTTATTCTGTTCCTAAAAATGCTAACAACACCACCGACCCAAAACCTCTCTTATCACCCTTTCTGTTGAGAGGTGGCAACCCNAAATCAGAAGAGAGATGAAGAGAGCGAGAACGGGAAAGTTAGACTCCTTATTCTCGCTCACAAGGCAACGATCCTTTCAGATTCTCTTCGTCACTGCGCTCTTGTACATCCTTTTGTTCACGCTCGAAATCCCTTTCGTATTCAGAACCGCCACCACTCGCTCCCTCCCACTCGAAGAACGAGTCTCGCTCAGCGCGGANCCACCGAGTCAGAGCAACCGCCGCCAAAACAACGTGATCGTGTCCGGGTTGGTCCTCGACGGCGACGCGTTCGACTCGGAGGCGTACCAATCCGCGTGCCGAGTTGGGAAGAGGGTCTGGGAGGGGCTCCAATCGGGGAAAAACACCGGAAGCAGCAGCAGCAGCAGCTTCGTTGCGAAACCCGAGAACCGATCCGGGTCGTGTCCGAGGTCCGTTTCGGTTACCGGGTCGGAGCTCAGGGGGCGCNAGGGGAGGGGGGTGGTGGTGATTCCGTGCGGGCTTACGCTGGGGTCGCACATAACGGTGGTTGGGAAGCCGTTGAGGGTTGAGGAGGAGGGGTGTCAGTTTGTGATGGAGTTGCAGGGGTTGGAGACGGTGGAAGAGGGGGAGGAACCACCGAGGATACTGCATTTCAATCCGAGGTTGAAAGGGGATTGGAGTGGGAAGCCAGTGATTGAGCTCAATACCTGTTACCGCATGCAGTGGGGTTCTGCTCTTCGCTGTGATGGTTGGAAATCCAGGGCCGATGAAGATACTGTTGACGGGCTGGTGAAGTGTGAGAAGTGGATTGGGGGCGAAGATAGGCACGCACTGGAGTCTAAATCAGAATGGTGGTTGAAGAGACTGATAGGCCGGACAAAAGAAGTAACAGTTGACTGGCCATTCCCATTTGCTGAAAATAAGCTATTTGTCCTCACTCTTAGTGCTGGATTGGAGGGCTATCATATTAACATTGATGGGAGGCANGGTTTTACTCTTGAGGATGCTACTGGACTCACTGTGAGTGGGGATATCGATGTCCATTCTATATTTGCTGCCTCCTTGCCACCAACGCATCCTACTATTTCCCCACAGCAGCAGCTTGAATTTTCAACCAGATGGCGTGCCCCAACACTACCCAACTCTGGCGTGGAATTGTTCATTGGCATCCTCTCAGCTGGNAACCATTTTGCTGAGAGGATGGCTGTAAGAAAGTCATGGATGCAGCATAGCCTCATCAAATCTTCAAAAGTGGTGGTCCGTTTCTTTGTAGCACTGCACCCTAGAATAGAAGTGAATGCAGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTGCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCGAAGTATATCATGAAAGGTGATGATGACACTTTTGTAAGAGTGGATGCTGTTGTAAATGAAGCAAGGAGCGTTCCGGGTTACATGAGCTTTTACATCGGGAATATTAATTACCNCCACAAACCCTTGCGCCATGGTAAATGGGCCGTGACATATGAGGAGTGGCCAGAAGAGGATTACCCACCCTATGCTAATGGACCNGGTTATATTTTGTCTTCTGATATTGCACGCAAAGTTGTATCTGACTTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACCGCACCAAACCAGTACACTATTCGCATAGCTTAAAGTTCTGCCAGTTTGGGTGTATAGAAAACTATTACACTGCCCATTACCAATCGCCCAGGCAGATGATTTGCCTTTGGGATAAATTGCAGCAGCAGACAAGTCCTCAGTGCTGCAACATGAGATAACAAAGTGGTATCAGATGCCATCTCTGTTTGAGTTCACTGAGGAACAAAGAAAACAAGTTTTGCAGTCAATAGCTTAGCTTCGTATATTGTACATACAGTGGAGCTTGGATAGTTAACGTAGCCCTGTATAAATGGCCTTTTAAATCCCATTATTTATTCTTTTGGTAAGAAAANCTCATTACTTATAGTTACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	195411	199212	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0008378 galactosyltransferase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015515.1	PF00337.17	Gal-bind_lectin	149	333	3.00E-38
Glyur000247s00015515.1	PF01762.16	Galactosyl_T	381	561	1.70E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.711
SRR1783600	control	10.966
SRR1783602	moderate drought stress	12.230
SRR1811619	moderate drought stress	11.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.448
DRR006520	Root Summer glycyrrhizin high producing strain	15.782
DRR006521	Root Winter glycyrrhizin high producing strain	5.962
DRR006522	Root Winter glycyrrhizin high producing strain	5.645
DRR006523	Root Summer glycyrrhizin low producing strain	9.866
DRR006524	Root Summer glycyrrhizin low producing strain	9.936
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.581
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.708
SRR2868004	Drought Stress (root)	10.684
SRR2967015	Control (root)	12.144

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.286
SRR9715740	Leaf	3.273
SRR9715741	Leaf	2.942
SRR9715739	Root	5.849
SRR9715742	Root	5.602
SRR9715743	Root	5.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.967
SRR8749028	MeJA induced 9h	2.854
SRR8749029	MeJA induced 9h	1.501
SRR8749030	Uninduced	1.733
SRR8749031	Uninduced	0.872
SRR8749032	Uninduced	1.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.585
SRR8400027	Control - Root	10.426