Gene detail

Gene detail information of Glyur000247s00015505

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G74850.1	plastid transcriptionally active 2
NR	XP_004508810.1	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9S7Q2\|PP124_ARATH	Pentatricopeptide repeat-containing protein At1g74850, chloroplastic (Precursor)
trEMBL	tr\|A0A072US54\|A0A072US54_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:KEH31873.1}

Sequence

Transcript Sequence

>Glyur000247s00015505.1
ATGAGCCTTTCACTTTCACTCTCACTTTCCCCCTCTCTCCACGTGTCCAACCCTTCCCCTTTCTCCCCGACGCCAAACAACACCTTCAGCCACCAACCCTTGTTCCCGGCGGGCTTCGGAACCAAAGCCCAACAACGGAGGTTCCAATTCGAGGCCCGCGCGAAGCCCAGGGAACTCATCCTTGGAAACCCGTCGGTGACGGTAGAGCAAGGGAAGTACAGCTACGACGTGGAAACCCTAATCAACAAGCTCAGCAGCTTGCCGCCACGTGGCAGCATCGCACGGTGCCTCGACTCCTTCAAGAACAAGCTCTCGCTCAACGACTTCGCGGTGGTGTTCAAGGAGTTCGCTCAGCGCGGTGATTGGCAACGCTCGCTGCGACTCTTCAAGTACATGCAGCGACAGATATGGTGCAAGCCCAACGAACACATATACACCATCATGATCACCCTGCTTGGAAGGGAAGGGTTGTTGGATAAGTGCCGCGAGGTGTTTGATGAAATGCCAAGCCAGGGTGTCCCTCGCACCGTCTTCGCTTACACCGCAATCATCAACGCCTACGGTCGCAACGGTCAGTTTCAAACCTCGCTTGAGCTCCTCGATAGAATGAAGCAGGAGAGGGTTTCACCGAGTATATTAACTTACAATACTGTCATAAATGCTTGTGCCAGGGGTGGGTTGGATTGGGAGGGTTTGTTAGGGTTGTTTGCTGAAATGAGGCATGAGGGTATACAGCCTGATGTTATTACTTATAATACTTTGCTAAGTGCTTGTGCTCATAGGGGATTAGGTGATGAAGCTGAAATGGTGTTTAGAACCATGAATGAAGGTGGCATAGTTCCTGATATTACTACTTATAGTTATCTTGTTCACACGTTTGCTAAGTTGAATAAACTTGATAAGGTCTCTGAGCTTCTTAGGGAAATGGAGTCCGGGGGTAATTTGCCAGATGTTAGCTCTTATAATGTGCTTTTGGAGGCCTATGCGGATACTGGGTCCATCAAAGAGGCCATTGGCGTGTTCCGGCAGATGCAGGCCGCGGGGTGTGTGCCAAATGCCGCCACGTATAGTCTCCTGTTGAATTTGTATGGGAAGCATGGGAGGTATGATGATGTTCGCGATCTTTTTCTTGAGATGAAGGTGAGCAACACGGACCCTGATGCCGGTACTTATAACATCCTCATACAGGTCTTCGGGGAGGGTGGATATTTTAAGGAGGTTGTCACTTTGTTTCATGACATGGTGGAGGAAAATATTGAGCCAAACGTGGAGACTTATGAGGGTTTGATATTTGCTTGTGGGAAGGGAGGGCTTTACGAAGATGCCAAGAAGATGTTACTTCATATGAATGGAAAGGGAATAGTTCCAAGTTCCAAAGCTTATACTGGGGTAATTGAGGCATATGGGCAGGCAGCTCTGTATGAAGAGGCTCTAGTTGCATTTAACACTATGAATGAAGTGGGAAGCAACCCAACTGTTGAAACCTACAATTCACTCGTTCGTGCATTTGCAAGGGGGGGATTGTACAAAGAAGTGGAAGCAATTTTATTCAGGATGAGCGAGTCTGGTTTACAGCGGGATGTGCATTCATTCAATGGTGTCATCGAAGCTTTTAGGCAAGCAGGCCAGTATGAAGAGGCTGTAAAAGCTCACGTTGAGATGGAAAAAGCAAACTGTGATCCTAACGAGATGACACTGGAAGAAGTATTAAGCGTATACTGCTCTGCAGGTCTTGTTGACGAGAGTGAGGAGCAGTTCCAAGAAATTAAAGCTTCGGGAATATTGCCCAGTGTCATGTCAAACGATTCCTATAATCTAATTGACGAGATGATCACAACAAGGGTGTCGGATATTCATCAAGTGGTTGGACAAATGATCAAGGGACATTTTGATGATGACTCTAATTGGCAGATTGTAGAGTATGTCTTTGACAAACTCAATTCTGAAGGATGTGGATTCGGAATGAAGTTCTACAATGCACTATTAGAAGCTCTTTGGTGGATGCACCAGAGAGAAAGAGCATCCAGAGTGCTCAATGAAGCATCAAAGCGAGGACTTTTCCCTGAACTTTTTCGTAAAAATAAGCTTGTGTGGTCTGTGGATGTACACAGGATGTCGGAAGGTGGTGCATTAACAGCATTATCATTTTGGTTGAACAGTATGCACGAGATGTTCATGACTGGCGAGAATCTTCCNGAACTTGCAACCGTTGTTGTGGCTCGGGGTAAAATGGAGGAAAGCACCGATGCCCAGGATTTCCCTATCGCAAAGGCTGCCTTTTCATTCCTGCAGGATAATGTCTCATCGTCCTTTACTTTTCCCGGATGGAACAAAGGTCGCATTGTTTGTCAGCAGTCACAACTGAGGCGAATTCTGTCGGGCACTGGATCATCTTCAAGTAGGAAAAAAATGGATAAATTAGTATCTTTAAGTAATACCCCATTGACTAATGCAGGAGCCATAACATCCAAATCTGATGTGCAAAGTGGTAAAGCTAATGATGTTGATTCTAGAACCGATAGTACGAGAACAGAGCTTCTAACTAGTTCAGTTTAGATTAGAAAAATGAAATATAGAAATTACATTCATCCCTTTTCCTTCGGTTTATTTGGAATTAAGATTGGGGCACGTACTATTTGTTTACACTCTTATTACGAAGTGGGCTGGCTTTCAGGTGTCCAAAGTTTTGGTAAATATATTCTGAAGGTATCTAAAGAAGCTCAGTTGGCTATTGTACCTATATTTACCCGTGTATTTGATTTGTTGATTCTGCATAGGAGACACCATAAAAAAAATACGACAATAAGCTACTGGGTGGGGTTTATTGCATGGATTAATCGATGCCACGATTTCCTATCATAGAGATCTTTTACATCTAAATTTCATTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	124322	128771	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015505.1	PF01535.15	PPR	144	173	3.80E-06
Glyur000247s00015505.1	PF13041.1	PPR_2	176	224	4.00E-12
Glyur000247s00015505.1	PF13041.1	PPR_2	246	295	5.00E-12
Glyur000247s00015505.1	PF13041.1	PPR_2	316	361	5.40E-12
Glyur000247s00015505.1	PF13041.1	PPR_2	386	433	1.70E-10
Glyur000247s00015505.1	PF01535.15	PPR	460	488	0.32
Glyur000247s00015505.1	PF01535.15	PPR	495	524	3.40E-05
Glyur000247s00015505.1	PF01535.15	PPR	530	559	0.0032
Glyur000247s00015505.1	PF01535.15	PPR	570	594	0.035

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.762
SRR1783600	control	1.727
SRR1783602	moderate drought stress	1.486
SRR1811619	moderate drought stress	1.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.959
DRR006520	Root Summer glycyrrhizin high producing strain	2.896
DRR006521	Root Winter glycyrrhizin high producing strain	15.571
DRR006522	Root Winter glycyrrhizin high producing strain	15.089
DRR006523	Root Summer glycyrrhizin low producing strain	4.113
DRR006524	Root Summer glycyrrhizin low producing strain	3.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.050
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.878
SRR2868004	Drought Stress (root)	5.474
SRR2967015	Control (root)	6.107

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.918
SRR9715740	Leaf	42.412
SRR9715741	Leaf	25.508
SRR9715739	Root	0.661
SRR9715742	Root	2.848
SRR9715743	Root	3.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.116
SRR8749028	MeJA induced 9h	13.737
SRR8749029	MeJA induced 9h	10.274
SRR8749030	Uninduced	9.360
SRR8749031	Uninduced	23.511
SRR8749032	Uninduced	20.318

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.966
SRR8400027	Control - Root	3.782