Gene detail

Gene detail information of Glyur000247s00015496.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48160.2	2.00E-46	DP-E2F-like 1
NR	XP_004508820.1	9.09E-117	PREDICTED: E2F transcription factor-like E2FE-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8LSZ4\|E2FE_ARATH	1.00E-54	E2F transcription factor-like E2FE
trEMBL	tr\|A0A072URB0\|A0A072URB0_MEDTR	1.00E-105	E2F transcription factor-E2FE-like protein {ECO:0000313\|EMBL:KEH31861.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	56689	57899	-

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005667 transcription factor complex

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015496.1	PF02319.15	E2F_TDP	2	68	5.10E-13

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.738
SRR1783600	control	1.340
SRR1783602	moderate drought stress	0.557
SRR1811619	moderate drought stress	0.473

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.051
DRR006520	Root Summer glycyrrhizin high producing strain	3.326
DRR006521	Root Winter glycyrrhizin high producing strain	0.150
DRR006522	Root Winter glycyrrhizin high producing strain	0.146
DRR006523	Root Summer glycyrrhizin low producing strain	1.184
DRR006524	Root Summer glycyrrhizin low producing strain	0.900
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.504
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.540

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.404
SRR2868004	Drought Stress (root)	3.121
SRR2967015	Control (root)	4.139

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.315
SRR9715740	Leaf	0.129
SRR9715741	Leaf	0.659
SRR9715739	Root	0.012
SRR9715742	Root	1.213
SRR9715743	Root	0.652

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.103
SRR8749028	MeJA induced 9h	4.950
SRR8749029	MeJA induced 9h	4.131
SRR8749030	Uninduced	0.436
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.231

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.398
SRR8400027	Control - Root	5.000