Gene detail

Gene detail information of Glyur000247s00015495.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G74920.1	aldehyde dehydrogenase 10A8
NR	XP_003608928.1	Betaine-aldehyde dehydrogenase [Medicago truncatula]
COG	YP_004677560.1	betaine aldehyde dehydrogenase 1 [Hyphomicrobium sp. MC1]
Swissprot	tr\|Q9S795\|BADH1_ARATH	Betaine aldehyde dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|G7JNS2\|G7JNS2_MEDTR	NAD-dependent aldehyde dehydrogenase family protein {ECO:0000313\|EMBL:AES91125.1}

Sequence

Transcript Sequence

>Glyur000247s00015495.1
TTTTATTGGATAGGCCCTTATATAGCTCAGATGNGTCAGTAAATCGAGCAACTCGTACTGTACTCATCTCCAATCCATCGAAATCAACTTGATTGATTCACCAATAGAGAGAGAGAGAGAAGATGGATATGGGGATCCCGAGTCGACAGTTATTCATAAACGGAGACTGGAAAGCTCCCATCCTCAACAAACGGATTCCCATCATCAACCCTTCCACCCAACAGATAATCGGGGATATCCCAGCGGCTACTAAGGAAGATGTTGACGTTGCTGTGGCCGCTGCGAAAGCTGCCCTCTCCNGTAACAAGGGCGCAGATTGGGCCTCCGCTCCTGGCGCTGTTCGTGCCCGCTATCTACGCGCCATCGCCGCCAAGATTACTGAGAAAAAGTCTGAGCTCGCTAAACTTGAAGCCATCGATAATGGTAAACCACTCGATGAAGCCGCTTGGGACATGGATGATGTTGCTGGTTGCTTTGATTTCTATGCTGACCTTGCTGAAAAGTTGGATGAGAAGCAGAAGGCGCCTGTGTCTCTTCCCATGGAGACATTCAGGACTTATGTCCTTAAGGAGCCCATCGGGGTCGTTGGATTGATCACTCCATGGAATTATCCTTTGTTAATGGCTACATGGAAGGTTGCTCCTGCTCTGGCTGCTGGCTGTGCTGCGATACTGAAGCCGTCTGAATTGGCATCTGTGACCTGCTTGGAGCTGGGCGAAATATGCAAAGAAGTGGGACTTCCTCCAGGTGTGTTGAATATTCTCACNGGATTTGGCCCTGAAGCTGGTGCTCCATTGGCATCCCATCCTGATGTTGACAAGATTGCCTTTACCGGAAGCTCTGCAACTGGGAGCAAAGTTATGACAGCTGCAGCTCAGCTGGTCAAGCCTGTTTCACTAGAGCTCGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCTCGCCTTATTGTACATGAAAGTATAGCAACAGAATTTTTGAACAGGATTGTGAAATGGATCAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGACCTGTTGTTAGTGAAGGGCAGTATGAAAAGGTATTGAAGTTAATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACCGGTGGGTCTCGCCCAGAGCATCTAAAGAAAGGATTCTTTGTTGAACCAACCGTCATAACTGATGTGACTACTTCCATGCAAATTTGGAAAGAGGAAGTATTTGGACCTGTTCTCTGTGTAAAAACATTTAGCACNGAGGAAGAAGCTATTGATCTAGCAAATGACACTATCTATGGCTTAGGTGCTGCTGTAATATCAAACGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTATGGATCAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCGTTAAACGTAGCGGTTTTGGCCGTGAATTAGGAGAATGGGGACTTGATAATTACTTGAGCGTGAAGCAAGTGACTCAGTATATCTCTGATGAACCATGGGGCTGGTACCAATCTCCTTCAAAGCTGTGATGGGTATCTAATCTAAAAGCTGACATCGAATAAGGGTTGGGTAATACCAAATTATGAGGAATATAATGTCTTTGTATAACAGTGGAAGTGGTTTGCACTCAAGTTTGNGCCGGTAATGTTTTTTATTTGATTCGGTATTTTGGCTGGCTTCACCATCATGCTTCTAATGTTTGAACGTCATCATGACAGACTTCTCTCTACTCTGGCATCATTCCTACTATCCATGCCACCCTTTATATGGTAGCAACATTTCTTAAGCTTAAGGTTATGATATTCACACGTTCGTCACCTACTTATANGCAAATCATTTGATGTCACCTTGGTTCGTTTGTAATTTTCTCTGAATGGCCCAAACAAGTAGGAGCATGTTTGGATTGCAGTTTGGCTTTCCTAAAAGTACTTTTGGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	49082	53680	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00130	betB, gbsA	EC:1.2.1.8	Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015495.1	PF00171.17	Aldedh	23	485	7.80E-182

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.758
SRR1783600	control	51.017
SRR1783602	moderate drought stress	56.894
SRR1811619	moderate drought stress	56.548

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.928
DRR006520	Root Summer glycyrrhizin high producing strain	48.581
DRR006521	Root Winter glycyrrhizin high producing strain	36.195
DRR006522	Root Winter glycyrrhizin high producing strain	35.258
DRR006523	Root Summer glycyrrhizin low producing strain	28.224
DRR006524	Root Summer glycyrrhizin low producing strain	28.656
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	143.278
SRR2868004	Drought Stress (root)	147.672
SRR2967015	Control (root)	144.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	79.945
SRR9715740	Leaf	65.360
SRR9715741	Leaf	95.479
SRR9715739	Root	62.027
SRR9715742	Root	73.554
SRR9715743	Root	73.792

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.913
SRR8749028	MeJA induced 9h	47.699
SRR8749029	MeJA induced 9h	47.572
SRR8749030	Uninduced	25.587
SRR8749031	Uninduced	12.433
SRR8749032	Uninduced	25.276

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.213
SRR8400027	Control - Root	79.685