Gene detail

Gene detail information of Glyur000247s00015491

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50110.1	8.00E-98	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_003525181.1	5.26E-168	PREDICTED: uncharacterized protein LOC100818428 [Glycine max]
COG	YP_077159.1	6.00E-58	glucose inhibited division protein B [Symbiobacterium thermophilum IAM 14863]
trEMBL	tr\|I1JZW8\|I1JZW8_SOYBN	2.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01800.1}

Sequence

Transcript Sequence

>Glyur000247s00015491.1
AGCTCGCTCGCAACACCAGCAGTTGAGTGCGAACTGCGAGGACGTGAAAGCGCGCGGTGGGAGATGGTTCTTAACTTGCAGTTTTCTCGGTGGACTTTCTTCAAACACCTTACGACGCCGAAATCCACAACACTCTGTAAGTGTCAGCACAAATCCACNGCTAATTTCTCCCACTTCGGAACCCTAAACTCGCGCCAGAAAGACCAGATTCATCTCTACGTCGACGCTCTTCTTCAATGGAACCAGCGCATGAATCTAACCGCAGTTAAAGACGTGAACGAAGTCATGGAAAGGCACGTGGAGGACTCGCTTGCGATTTTGCCTCCGTTGAGCGATTGCTATCGCACTCACTGCGGCACTTCATGCGATACTAAGCTCAACCTTGTAGATGTCGGAACAGGCGCGGGACTTCCTGGAGTAGTCATGGCCATAGCTCGCCCAGAATGGGATGTGACGCTGCTCGAGTCTATGAACAAGCGATGCGTCTTCTTGGAGCACGTTGTCAGTGTTATCGGTTCCTCCAACATTCAAATTGTAAGAGGAAGAGCAGAGAATCTAGGGCAGAATCTTTGCTACAGAGAGAAATTTGATGTAGCAGTAGCCAGGGCAGTTGCAGAGATGAGAATATTAGCTGAGTATTGTCTTCCGTTGGTTCGTGTTGGTGGATTGTTTATTGCTGCCAAGGGTCATGATCCTGAGGATGAAGTTAGGAAAGCTGAAAGNGCCATCCAGAAGATGGGTGCATCGTTATTGCAAGTATGCCCAGTGGAATCGCAAAGCCCATATGGTCAGCGTACTGCGGTCATATGTCTAAAGAATCGTCCCACCCCAGGGAAATATCCCCGTGATCCCGGTACACCAGCTAAAGAACCATTGTAAGGTGGATGCTCTTTCTGTTGGCTGTGGGTGTTATTCATTCNTTCTACTCGATCCTCTTCCTTAATCAGCGTCTGAGAAGGACCCGCATAAATTATAATATGCACCAGTGGCTCAATTTTTTCAGCTCATGTAACNTGCTTTTATTATATTTATCACTGCTGTTATGACTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00247	32959	36262	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006364 rRNA processing

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0008649 rRNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000247s00015491.1	PF02527.10	GidB	66	257	6.90E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.719
SRR1783600	control	1.839
SRR1783602	moderate drought stress	2.523
SRR1811619	moderate drought stress	2.732

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.033
DRR006520	Root Summer glycyrrhizin high producing strain	2.134
DRR006521	Root Winter glycyrrhizin high producing strain	2.152
DRR006522	Root Winter glycyrrhizin high producing strain	2.045
DRR006523	Root Summer glycyrrhizin low producing strain	2.495
DRR006524	Root Summer glycyrrhizin low producing strain	2.529
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.019
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.969

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.525
SRR2868004	Drought Stress (root)	8.484
SRR2967015	Control (root)	4.978

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.837
SRR9715740	Leaf	4.202
SRR9715741	Leaf	0.902
SRR9715739	Root	2.262
SRR9715742	Root	1.089
SRR9715743	Root	1.120

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.893
SRR8749028	MeJA induced 9h	2.257
SRR8749029	MeJA induced 9h	2.142
SRR8749030	Uninduced	0.445
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.615

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.069
SRR8400027	Control - Root	7.251