Gene detail information of Glyur000247s00015486 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14920.1 | 2.00E-17 | Gibberellin-regulated family protein |
| NR | AFK40541.1 | 1.17E-67 | unknown [Lotus japonicus] |
| Swissprot | tr|Q93X17|SNAK2_SOLTU | 4.00E-24 | Snakin-2 (Precursor) |
| trEMBL | tr|I3SJU9|I3SJU9_LOTJA | 4.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK40541.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00247 | 5770 | 7052 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000247s00015486.1 | PF02704.9 | GASA | 55 | 115 | 3.60E-20 |
| Glyur000247s00015486.2 | PF02704.9 | GASA | 55 | 115 | 3.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 118.293 |
| SRR1783600 | control | 116.068 |
| SRR1783602 | moderate drought stress | 745.012 |
| SRR1811619 | moderate drought stress | 733.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.959 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.282 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1949.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1886.736 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.093 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.456 |
| SRR2868004 | Drought Stress (root) | 8.898 |
| SRR2967015 | Control (root) | 22.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.858 |
| SRR9715740 | Leaf | 3.463 |
| SRR9715741 | Leaf | 8.823 |
| SRR9715739 | Root | 225.438 |
| SRR9715742 | Root | 85.669 |
| SRR9715743 | Root | 103.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 701.773 |
| SRR8749028 | MeJA induced 9h | 551.216 |
| SRR8749029 | MeJA induced 9h | 721.784 |
| SRR8749030 | Uninduced | 339.605 |
| SRR8749031 | Uninduced | 58.245 |
| SRR8749032 | Uninduced | 807.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.932 |
| SRR8400027 | Control - Root | 36.397 |