Gene detail

Gene detail information of Glyur000246s00017001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55250.1	7.00E-160	IAA carboxylmethyltransferase 1
NR	XP_003544750.1	0	PREDICTED: indole-3-acetate O-methyltransferase 1-like [Glycine max]
COG	NP_924885.1	3.00E-18	cyclopropane-fatty-acyl-phospholipid synthase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9FLN8\|IAMT1_ARATH	0	Indole-3-acetate O-methyltransferase 1
trEMBL	tr\|I1M6L6\|I1M6L6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02160.1}

Sequence

Transcript Sequence

>Glyur000246s00017001.1
ATGGGAGAGAACAATGTGGTTGTGTCCAATATGGAACTGGAGAAGTTGTTTAGCATGAAAGGAGGCAAAGGAGAGTCCAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCGAGGTCGATGCTTCCCATATTGAAAGAAACCCTAGACAGAGTGAAGCTTACTAATATTGGTGGTGACGTGGCGGCGTTTGTGGTGGCGGATTTGGGGTGTTCATGTGGGAGCAACACGATAAACGTGGTGGATGTGATAATCAAGCACATGATAAAGAGGTATGAGGCATTAGGGTGTTACAACCCACCAGAGTTCTCTGCTTTCTTCTCTGACCTTCCAAGCAATGACTTCAACACACTCTTCCACCTCCTTCCTCCCCTCGCCACCCCCAACTTGGAAGAATGCCTCGCCGCCAACAACCACCGCTCCTACTTCGCCGCCGGTGTCCCCGGCTCTTTCTACCGGAGGCTCTTTCCGGCCAGGTCCATCCATGTTTTCCACTCTGCCTTTTCCTTGCATTGGTTATCTCAGGTTCCAGAATGTGTGTTGGAGAAGAGGTCAAGTGCATACAACAAAGGAAGGGTGTTTATCCATGGTGCTAATGAGAGCACAGCCAATGGCTACAAGAAACAATTCCAAACAGACTTGGCAGGCTTCCTGAGTGCAAGGTCAGTGGAGATGAAGAGGGAGGGGTCCATGTTCTTAGTTTGCTTGGGCAGAACCTCTGTGGACCCCACAGACCAAGGTGGTGCTGGCCTCCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCCGCGAACAACGAGACAACTTTAACATTCCAGTTTATGCACCAAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCCAATGGTTCATTTGCCATAAACAAGCTTGAGGTATTCAAAGGAGGGAGCCCTCTTGTGGTGAACCAACCAGATGATGCAAGTGAAGTAGGAAGGGCTCTAGCCAATAGCTGCAGGACTGTGTGTGGTGTCCTTGTTGATGCCCACATTGGCGACAAGCTCAGTGAGGAGCTCTTCCTTAGAGTGGAGCGCCGAGCCACTACTCATGCTAAGGAGCTATTAGAGCAACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00246	216571	220480	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000246s00017001.1	PF03492.10	Methyltransf_7	60	367	3.20E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.813
SRR1783600	control	1.765
SRR1783602	moderate drought stress	5.682
SRR1811619	moderate drought stress	5.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.099
DRR006522	Root Winter glycyrrhizin high producing strain	0.096
DRR006523	Root Summer glycyrrhizin low producing strain	0.196
DRR006524	Root Summer glycyrrhizin low producing strain	0.197
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.901
SRR2868004	Drought Stress (root)	1.965
SRR2967015	Control (root)	3.683

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.028
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.093
SRR9715739	Root	9.740
SRR9715742	Root	2.294
SRR9715743	Root	3.016

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.162
SRR8749028	MeJA induced 9h	13.934
SRR8749029	MeJA induced 9h	15.136
SRR8749030	Uninduced	9.519
SRR8749031	Uninduced	10.401
SRR8749032	Uninduced	15.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.557
SRR8400027	Control - Root	6.531