Gene detail information of Glyur000246s00016997 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55220.1 | 0 | trigger factor type chaperone family protein |
| NR | XP_003544759.1 | 0 | PREDICTED: trigger factor-like protein TIG-like [Glycine max] |
| COG | YP_007126210.1 | 9.00E-44 | Trigger factor [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q8S9L5|TIG_ARATH | 0 | Trigger factor-like protein TIG, Chloroplastic (Precursor) |
| trEMBL | tr|I1M6M4|I1M6M4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G02220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00246 | 187052 | 192022 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000246s00016997.1 | PF05697.8 | Trigger_N | 94 | 233 | 6.80E-22 |
| Glyur000246s00016997.1 | PF05698.9 | Trigger_C | 376 | 534 | 4.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.031 |
| SRR1783600 | control | 26.206 |
| SRR1783602 | moderate drought stress | 27.001 |
| SRR1811619 | moderate drought stress | 27.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.336 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.349 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.402 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.555 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 44.145 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.970 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 90.685 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 90.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.931 |
| SRR2868004 | Drought Stress (root) | 8.777 |
| SRR2967015 | Control (root) | 15.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.214 |
| SRR9715740 | Leaf | 84.542 |
| SRR9715741 | Leaf | 50.318 |
| SRR9715739 | Root | 1.276 |
| SRR9715742 | Root | 7.342 |
| SRR9715743 | Root | 6.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.218 |
| SRR8749028 | MeJA induced 9h | 8.338 |
| SRR8749029 | MeJA induced 9h | 6.601 |
| SRR8749030 | Uninduced | 3.438 |
| SRR8749031 | Uninduced | 0.691 |
| SRR8749032 | Uninduced | 1.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.551 |
| SRR8400027 | Control - Root | 19.319 |