Gene detail

Gene detail information of Glyur000246s00016994

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26780.1	9.00E-62	Co-chaperone GrpE family protein
NR	KHN38246.1	5.68E-136	Protein grpE [Glycine soja]
COG	YP_676551.1	2.00E-27	heat shock protein GrpE [Chelativorans sp. BNC1]
trEMBL	tr\|I1JJD4\|I1JJD4_SOYBN	1.00E-136	GrpE protein homolog {ECO:0000256\|RuleBase:RU000640}

Sequence

Transcript Sequence

>Glyur000246s00016994.1
ACCCTTTTCTGTTTTCCTTTCCTCTTTTCTGTTTTTCTGAGAAAACAAGAGTTCCTCATTTCTTCCTCCGCATTGGATCTTCTTTTGCCATTCAACGTCCTCGTCTTTACATTTTGGTTCCTCAATCCTAAGCCATGTTCTTCTATAAAGTTTTGTCCCGTGTCTCGGGAACCATTTGCCGNACCTCGCTTCTCTCTGCTTCGCGAAAGCCCCAACAACAGTACTTCCCAGCCTTCTCCAATCACTTGCATTCCCAACCTCCCAGCAAGTTCATCAACTCCAAGGTTTGGATTTTNTTCATCAGCCTCAACCGAATCTAATGAAAAGGAAAAGGGGAATAATGTGCATAATGTTGATTCTTCAAATGATGACCCAGCAAAAACAAGTGAGGAGGCAAAGGAAATTGATCAGGATGGACAAGCCAAACCTGTAGATCAAACAGAAGAATCAGGTTCTGTTTCAGATTCTCAATCTCAAACTGTCAAAAGAAGGAGGAGTGGTGTTAAACGAACTGCATTTTCTGATTCAGACTCAGATTCAGAGAGTGGATGTGATCTATCCAGGGATGATTTAATTAAGCTTGTAACTGAGAAGGAAGAACTTTTGACGTTGAAGCACAAAGAGATTGAGGAAATGAAGGATAAAGTTCTGCGTACTTANGCAGAGATGGAGAATGTCATGGACAGGACTAGGCGTGAAGCGGAGAATTCAAAGAAATTTGCTATACAGAATTTTGCGAAGAGTTTACTAGATGTTGCGGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGTTTTTCAAAAATTGATACATCAAGTGACTCTGCTGANGCNGTAAAACTCCTGAAAACACTTCTGGATGGTGTTGAAATGACTGAGAAACAACTTTCTGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGACCCTATAAATGAACCGTTTGATCCACATAGGCATAATGCNGCAGGATATATACTTCATGATCGTGTCATTCGTCCAGCGGAAGTTGGTGTAACCCAAGCAGTAGAAGAAAACAATCCAGCAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00246	172421	176044	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function

GO:0000774 adenyl-nucleotide exchange factor activity

GO:0042803 protein homodimerization activity

GO:0051087 chaperone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000246s00016994.1	PF01025.14	GrpE	197	323	2.00E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.342
SRR1783600	control	31.768
SRR1783602	moderate drought stress	27.579
SRR1811619	moderate drought stress	27.449

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.079
DRR006520	Root Summer glycyrrhizin high producing strain	16.080
DRR006521	Root Winter glycyrrhizin high producing strain	15.003
DRR006522	Root Winter glycyrrhizin high producing strain	14.206
DRR006523	Root Summer glycyrrhizin low producing strain	14.178
DRR006524	Root Summer glycyrrhizin low producing strain	13.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.913

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.993
SRR2868004	Drought Stress (root)	9.737
SRR2967015	Control (root)	11.370

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.593
SRR9715740	Leaf	15.499
SRR9715741	Leaf	15.001
SRR9715739	Root	1.272
SRR9715742	Root	8.868
SRR9715743	Root	6.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.902
SRR8749028	MeJA induced 9h	16.228
SRR8749029	MeJA induced 9h	15.921
SRR8749030	Uninduced	5.263
SRR8749031	Uninduced	3.727
SRR8749032	Uninduced	4.544

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.336
SRR8400027	Control - Root	20.069