Gene detail

Gene detail information of Glyur000246s00016985

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55790.1	2.00E-58	Domain of unknown function (DUF2431)
NR	AET00592.2	3.26E-140	DUF2431 domain protein [Medicago truncatula]
Swissprot	tr\|P0C8L4\|Y4648_ARATH	4.00E-64	Uncharacterized protein At4g26485
trEMBL	tr\|G7K8N9\|G7K8N9_MEDTR	1.00E-140	DUF2431 domain protein {ECO:0000313\|EMBL:AET00592.2}

Sequence

Transcript Sequence

>Glyur000246s00016985.1
AGGCAAAGGGAAAGGCATATCAATGGATTCCAAAATGGAAGAGAAACGGATAAAACATTACAGTAGCAGCCATAAGATACTGCTGGTGGGAGAGGGAGATTTCTCTTTTGCACTTTCTTTGGCTAATGCATTTGGCTCTGCTTCTAACATTGTAGCAACCTCCCTTGACTCCAGAGGATCATTAAAATGGAAATACTCCAGAGCTTCAACAAATTTGGAAGAACTAGAGAACCTTGGTTGCATCATTGTGCATAAAGTGGATGCCCATAGCATGCATGAACACCCCTTGTTGCAAAACAAGTTTTTCGATCGCANAGTGTTTAATTTTCCTCACGCTGGATTTGGTCGCAATTTCCGCGAGTGTTATCCACACCAAATTGAGCTCCACCAGAATGTGGTGTCGGGGTTTCTGAACAATGCAAGGAAGATGCTAACCGACGATGGGGAAGTTCATGTGACACACAAGAATAGCTACCCTTTTTGTAAGTGGGAAATAGTGAAGCTGGGACAGGAAGCTGGTTTGGTGTTGGTTGAGAAGAATGCGTTTAAAAGATGTGATTATGAAGGTTACATCAATAAAAGGGGATCCGGAAACAAGTGCAACAAAACGTTTCCCGTTGGTGATTGCAGCACCTTCAAATTCTCAATTAAGCGTCGCAAGAAAAAAACTAAAGCACGTGATGTGGGATCGTGCGTTTCGGGGCTGTTAGCATCAGCAATCTCAGTCTCAGGTTGCGCAACTTTGGAACCGGATAAACTGGATTCCAAAATGGAAGAAAAATGGATAAAACACTACAGTAGACATCAGATGATACTGCNGGTGGGAGAGGGAGATTTCTCTTTTGCACTCTCTTTGGCCAATGCATTTGGCTCTGCTCTTAACATAGTAGCGACCTCCCTTGATCCCAGATGGTCATTACTAAGGAAGTACTCCAAAGCCTCAACAATTTTGAAAGAACTAGAGAACCTTGGTTGCACCATTGTGCATGAAGTGAATGCCCATAGCATGCACGAACACCCCTTGTTGCAAAACAAGTCTTTCGATCGCATAGTGTTCAATTTTCCTCACGTTGGATTTGGTATACATAGTATCGATGAGAATTGCTACTACCAAATTCGGGAATATCCAGGTTACACAATAAATTCGGATCTGGAAAAAACTGCGGTAGAAACTTTACTCTTGGTGATTGCAGCACCTACAAATTCTCAATTAACTGTCCCAAGAAAAAAACTAAAGCACGTGATGTGGGATCAAAAATGGATAAAACACTACAGTAGCAGGCATAAGATACTGCTAGTGGGAGAGGGAGATTTCTCTTTTGCACTCTGTTTGGCAAATGCATTTGGCTCTGCTTCTAACATTGTTGCAACATCCTTTGATTCCAGAGGATCATTAAAATGGAAATACTCCAGAGCTTCAACAAATTTGGAAGAACTAGAGAACCTTGGTTGCATCATTGTGCATGAAGTGGATGCCCATAGCATGCACGAACACCCCTTTTTGCAAAACAAGTTTTTCGATCGCATAGTGTATAATTTTCCTCACACTGGATTTGGTCGCAATTTCCGCGAGTCTAATCCACACATAATTGAGCTCCACAAGAATTTGTTGTCAGGGTTTCTGAACAACGCAAGGAAGATGCTAATCGATGTTGGCGAAGTTCACGTGACACACAAGAATGGCCACCCTTATTGTAAGTGGGATTTAGTGAAACTGGCAAAAGAAGCTGGTTTAGTGTTGGTTGAAAGGGTGCGGTTTGAAATATGGGAATATCCTGGTTACAACAATAAATTCGGATCTGGAAAAAACTGCGATGGAAACTTTACTCTTGGTGATTGCAGCACCTACAAATTCTCAATTAACCGTCGCAAGAAAGAAACTAAAGTACGTGATGTGGGATTGTGTGTTTCGAGGTTGTCAGCATCAACAATCTCAGTCTCAAGTTGTGCAACTTTGGAACCGGATAAGCCGGTGATAGAATCTGTTGAAATCACTGCAGTCGAACCGGATAAACCAAAGATAGAAACTGTTGAAATTACTGTGGTTGATAAGCCAGAGGTAGAAATTGTTGAAATTATTGCAGTTGAACCGAATAAACCAGAGATAGAAACTGTTGGAATCATTGTAGTCGAACAGGATAAACCAGAGATAGAAACTTTTGGAATCTCTGTTGTTGAACCGGATGAGCCGGTGATAGAAACCGTTGCGGTCACTGGAGTCAAGGACAAGTCTTGGAGCGGTTGTATAAAGATGATATTCAAGAAAGGATTTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00246	100738	112250	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000246s00016985.1	PF10354.4	DUF2431	20	187	1.60E-48
Glyur000246s00016985.1	PF10354.4	DUF2431	265	360	1.00E-27
Glyur000246s00016985.1	PF10354.4	DUF2431	424	590	6.60E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.323
SRR1783600	control	1.173
SRR1783602	moderate drought stress	1.008
SRR1811619	moderate drought stress	1.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.900
DRR006520	Root Summer glycyrrhizin high producing strain	1.456
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.145
DRR006524	Root Summer glycyrrhizin low producing strain	1.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.209
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.506
SRR2868004	Drought Stress (root)	2.428
SRR2967015	Control (root)	2.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.480
SRR9715740	Leaf	1.105
SRR9715741	Leaf	1.255
SRR9715739	Root	1.103
SRR9715742	Root	4.405
SRR9715743	Root	2.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.125
SRR8749028	MeJA induced 9h	0.041
SRR8749029	MeJA induced 9h	0.007
SRR8749030	Uninduced	0.149
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.060

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.115
SRR8400027	Control - Root	1.912