Gene detail

Gene detail information of Glyur000246s00016967.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55180.1	0	O-Glycosyl hydrolases family 17 protein
NR	XP_003519593.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Glycine max]
Swissprot	tr\|Q9FJU9\|E1313_ARATH	3.00E-127	Glucan endo-1,3-beta-glucosidase 13 (Precursor)
trEMBL	tr\|I1JJC7\|I1JJC7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46330.1}

Sequence

Transcript Sequence

>Glyur000246s00016967.1
GTTCTGGTTCTCAAAACATAGGTGTGAGTGGTTCTCCAAAATGGGTCCCACCAATATTGCGTGAAAAGCGTAAACCCTTTTCCTTCAACCCAGGCCTGGCCCACCACCACTCCCCACTCACTCTCTATAAAAAATAACACTCCCTCCTCAGAAAAGAAAAATAACTGATCCTATTCTCTCTCTGTTCTGCATGCTCTGCTTCTTCTATCAGAAACAGAGCATGGCTTCTTCTCTCGCATTCTCCTTCTTCTTCCTCATGTTCATCTCACTCTCTGCTTCCTCATCAGAAGCAGGGTCTATCGGAATAAACTACGGAAGGGTGGCGAACGATTTACCGACACCGTCGAAGGTGGTGGAGCTTCTGAAGGCTCAGGGTATCAACCGCGTGAAGCTCTACGACACCGACGCCTCCGTGCTAACCGCGCTCGCAAACTCAAACATCAAGGTCGTCGTCGCCATGCCCAACGAGCTTCTCTCCGCCGCGTCCNCCGACCAGTCCCTCACCGACGCGTGGGTCAAAGCAAACATCTCAAGCTACTACCCTGCCACACAAATCGAAGCCATCGCCGTCGGAAACGAGGTNTTCGTGGACCCCAAAAACACCACCAAGTTCCTCGTACCCGCCATGAAGAACGTGCACGCCTCGCTGGCGAAGCAAAACCTCGACACCGCCATTAAAATCTCCTCCCCAATCGCACTCTCCGCTTTGCAATCCTCGTACCCCACGTCATCCGGTTCGTTCAAAACCGAACTTGTCGAACCAGTTATTAAACCGATGCTGGAGTTCCTCCGCCAAACCGGTTCGTACCTCATGGTGAACGCTTACCCGTTCTTCGCTTACGCCGCTAACTCCGACACGATCTCATTGGATTACGCGCTCTTTAAGGACAACCCTGGAGTCGTGGATTCCGGTAACGGTTTGAAATACACCAACCTATTTGACGCCCAACTCGACGCCGTTTTTGCTGCCANGTCAGCACTCCAATACGACGACGTTAAGATAACCGTTTCGGAGACGGGTTGGCCCTCACAAGGGGATTCGAATGAGATTGGAGCAGGGCAAGACAATGCGGCGTCGTATAATGGGAATTTGGTTAGGCGCGTGTTGAGTGGGAGTGGGACCCCCTTGAGACCCAAGGACCCACTCAACGTGTTTTTATTCGCGCTCTTCAACGAGAACCAGAAACCGGGTCCCACATCGGAGAGGAACTACGGGCTGTTCTACCCGAGTGAGAAGAAGGTTTATGATATTCCGCTGACGGTTGCTGGGCTCAATCAGTCGGCGGCGGATTCCGGGGTTGGGAAGAGTCAGGTTCCGGTGCCGGCGCGNCGTGGCCAGACGTGGTGCGTGGCGAGTGGCGGTTCCTCTGAGGAGAAGCTTCAGGCTGNGCTTGATTACGCTTGTGGTGAGGGTGGGGCTGATTGCACTGCCATTCAGCCGGGTGCCACGTGTTACAGTCCCAACACGTTGGAGGCGCACGCTTCCTACGCTTTCAACAGTTACTATCAGAAGAAGTCACGTGCCACTGGCACGTGCGATTTTGGTGGGGCCGCNTATGTCGTCACTCAGCCTCCTAAGTATGGGAATTGCGAATTCCCCACGGGATACTGAATGGACGGAAATGNAGTGCTGCATAATTACATTTTGGATCTGCTTGGGATTTAGTGGGATATTTTCCACACGCGTTTAGGCGATGAGAAACATGCGTTACTTGGACTATNCCATTTTTATTGCTTCTTTGCGATTGTAATAAAATTCATGAGTAGTTAAGTTAGGTNAGGAGCCAGGAGGACTATATATCGGTTTCTTAATTTGACTAATTTGTTTGTAATTATCCATATTTATGTTNTAATGAAGAAGATTATAGAATTCATTACTTGAACAGTTTTTGTTTCTTCTTTACGTTTTATTGAAGATTCGATTTCTTCTTTCTTTAGTTTCCTTTTAAAATCATCTAGTTGCTTTGCAAGATGATGTAGCTAAATTACTCGCTATCAATCTCGTATGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00246	19722	22021	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000246s00016967.1	PF00332.13	Glyco_hydro_17	37	354	4.20E-100
Glyur000246s00016967.1	PF07983.8	X8	384	455	3.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	104.545
SRR1783600	control	104.784
SRR1783602	moderate drought stress	49.925
SRR1811619	moderate drought stress	49.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	106.426
DRR006520	Root Summer glycyrrhizin high producing strain	105.571
DRR006521	Root Winter glycyrrhizin high producing strain	170.426
DRR006522	Root Winter glycyrrhizin high producing strain	165.088
DRR006523	Root Summer glycyrrhizin low producing strain	258.051
DRR006524	Root Summer glycyrrhizin low producing strain	256.304
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	190.489
SRR2868004	Drought Stress (root)	169.861
SRR2967015	Control (root)	244.891

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	237.102
SRR9715740	Leaf	159.038
SRR9715741	Leaf	283.059
SRR9715739	Root	347.458
SRR9715742	Root	266.761
SRR9715743	Root	284.794

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	436.175
SRR8749028	MeJA induced 9h	675.210
SRR8749029	MeJA induced 9h	433.671
SRR8749030	Uninduced	306.646
SRR8749031	Uninduced	238.789
SRR8749032	Uninduced	296.363

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	225.654
SRR8400027	Control - Root	209.441