Gene detail information of Glyur000245s00014705 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77620.1 | 2.00E-116 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_004498333.1 | 0 | PREDICTED: uncharacterized protein LOC101511766 isoform X1 [Cicer arietinum] |
| COG | NP_247879.1 | 2.00E-06 | replication factor C large subunit [Methanocaldococcus jannaschii DSM 2661] |
| Swissprot | tr|Q2R2B4|RFC1_ORYSJ | 3.00E-09 | Replication factor C subunit 1 |
| trEMBL | tr|G7I8G1|G7I8G1_MEDTR | 0 | P-loop nucleoside triphosphate hydrolase superfamily protein, putative {ECO:0000313|EMBL:AES59842.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00245 | 186732 | 194943 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.958 |
| SRR1783600 | control | 1.937 |
| SRR1783602 | moderate drought stress | 2.134 |
| SRR1811619 | moderate drought stress | 2.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.790 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.789 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.702 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.806 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.219 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.896 |
| SRR2868004 | Drought Stress (root) | 9.459 |
| SRR2967015 | Control (root) | 10.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.241 |
| SRR9715740 | Leaf | 3.319 |
| SRR9715741 | Leaf | 3.581 |
| SRR9715739 | Root | 0.340 |
| SRR9715742 | Root | 1.636 |
| SRR9715743 | Root | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.229 |
| SRR8749028 | MeJA induced 9h | 6.510 |
| SRR8749029 | MeJA induced 9h | 2.945 |
| SRR8749030 | Uninduced | 3.362 |
| SRR8749031 | Uninduced | 2.983 |
| SRR8749032 | Uninduced | 1.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.646 |
| SRR8400027 | Control - Root | 5.866 |