Gene detail

Gene detail information of Glyur000245s00014694

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26430.1	2.00E-91	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_010664903.1	0	PREDICTED: uncharacterized protein LOC100262628 [Vitis vinifera]
Swissprot	tr\|Q7Y1X1\|EST_HEVBR	2.00E-129	Esterase (Precursor)
trEMBL	tr\|W9S1G0\|W9S1G0_9ROSA	1.00E-179	GDSL esterase/lipase {ECO:0000313\|EMBL:EXB82504.1}

Sequence

Transcript Sequence

>Glyur000245s00014694.1
CAATTTTCTTCAGCACTTCTTCTCCCTTTGTATAACTGAAACATTTTTCTCTCATTCTCCGAGTCCAGTTCCAGTCCCCTTGTAAAACTGCGTCGTTTCGATCGCGTTCTAGTTCTGCTCGGTCAAACTAGCGGTTCCGAATCGTCCGAGCCACGCTGTTCTCTGTCAGCACAGCAATTCCAAACAGAGCCTAACTTCCTATAACTCCTCTCTCTCACGCGCTTNGCGCCAAGGTGGCTCTTCCACATTTCGCCGCCGCCGCCGCCGCTGCCACCGCCGTCACCGGAGAATCTTAATCAATGGATAAGTCGGTGTTTAACAGAGATGTCCACTTTAACCGNACATTCTCCACCTATTCTTGCCCTTCTCAGCGTGATGTCCGTTACAGCTGTGGCGCTTGTGGTTATGAGCTGAACCTATCCTCCTCAAACCGGAACACCTCATCCATCGGATCTAAATATGGAAAGTCCATAAAGCGAGGTATTATATCGTTCTTCAACATTGATGATAGCAGATTTACCCAGGTTGATGAAATTCAGTGTGTGCCTTATTTTCATAAGCACTCATGGGGCTTGTTCCGCCGAAGAACTAAGCTTCTTTGTCGCAAGTGTGGCAACCATATTGGAAATGCTTACAATGGTAACAATTCATCCTCCCCTCTCGTGTCAGATGGAGAAGAATCATCTCCTGGCTCCAAAGCAGCCAGTCGTGTAAAGTATGACATTCGCATTCGTGCCTTACAGCCTTCATCTTCTGAAGAATCTGGAGTTCCTATAGACTACAGAGATCGTTCTTCCTTCTTAATCCCACCGTGTGCTCAATTAATGTCTCTCCAAATGGAGTTTCTTAGCNCAAACAAGTTTCACATCTCACACGTGTCATTTTTGGTGGTTCTATCCATNGCTACCACCACATTGTTGATTAACCCTGTCATAATTGGTGCAACCAAAGAGTGCTATTTCCCTGCCATATTTAACTTTGGTGACTCNAACTCGGATACCGGTGGCTTGGCTGCTTCCCTTATAGCACCAACTCCACCCTATGGAGAGACTTATTTCCACAGACCCGCAGGAAGGTTCTCTGATGGCCGCCTAATCCTTGACTTCATAGCTGAGAGTTTTGGGCTTCCTTACCTGAGCGCATATCTTGATTCCTTGGGGACCAACTTCTCATATGGTGCAAACTTTGCAACATCAGCATCAACAATCACACCCCCACCTAGTATTCTACCTGAGGGTCAATTCAGTCCTTTCTACCTTGATTATCAGTACTTTCAGTTCAAAAATTTCAAACCCAGAACACAATTCATTAGGCATCAAGGAGGTGTATTTGCAACCTTGATGCCCAAAGAAGAGTATTTCCATGAAGCTTTGTACACATTTGATATTGGTCAAAATGATCTTGNTGCTGGCTTTTTTGAAAACATGACTGTACAGCAAGTGAATGCTTCTGTTCCTGATATAGTCAACACTGAAAGGGATGGCTATGGTTGTGCAAAGCCATTCAATGATGTAGCTCAGTATTTCAACCTCAAGTTGAAGGAAGAAGTAGCTCAACTTCGCAAGGACTTTCCTCTGGCTGCTTTCACATATCAACCACTAGTTGCTTGCTGTGGCTATGGAGGGGAGTACAACTTCAGCACTAGTGTTGGATGTGGAGGAACCATAGAGGTGAATGGCACTGACATTTTTGTGGGTTCATGTGAAAGACCATCTGTAAGAGTGAACTGGGATGGGATNCACTACACAGAAGCAGCTAACAAGTTCATCTTCCATCAAATTTCTAATGGNGCTTTCTCAGATCCACCCATTCCTTTGAATATGGCATGTCACACAAGTTCCTTGGTACTTTTCATGGCTCTAATTGATCAGTTTCTTAGTCACACCCCTCTTGTGACTTTTATTGTGCTTTTGTCTATTACTACAACAANACTAGTGAACCCTGTGATTGCCACAAAAGGTTGTGATTTCCCTGCCATCTTTAACTTGGGAGCCTCAAATTCGGATACTGGTGGCTTGGCTGCTGCCTTTACAGGTCCACCGTTTCCATATGGAGAAACTTATTTTCACAGGCCTACTGGAAGGTACTCTGATGGCCGAATCATCCTTGATTTCATAGCACATAGCTTTGGACTCCCCTATCTCAGTGCATACCTTAATTCCCTGGGGTCCAACTTCTCACATGGTGCAAACTTTGCAACAGCAGCATCAACAATCAGACTCCCGAATAGTATTATACCTAACGGGAGATTCAGTCCTTTCTCCCTTCAAATTCAGTACACTCAATTCAAAGAATTCATACCCAAAACAAAATTCATTAGAGATCAAGGAGGTGTATTTGCAACGTTGATGCCCAAAGAAGAGTATTTTTCAAAGCTTTATACACATTTGATATTGGTCAAAATGATCTTACCGCTGAACATATACAATTTAGGGGCTAGATCATTTTGGGTACACAACACAGGACCCATTGGATGCCTCCCTTTAATTTTGGCCAATATCCCATCCACTGAAAAGGATAGCTATGGTTGTGCAAAGCAATACAATGANGTAGCTCAGTATTTCAACCTCAAGTTGAAGGAAGCCTTAGCTCAACTTCGCAAAGACCTTCCTCTTGCTGCAATCACATACGTAGATATCTACACTCCCAAGTACAATCTTTTCCGCGACCCAAAGAAANACGGGGAGTACAACTATAGCGATCGTGTGGGATGTGGATCAACCGTAAACGTAAATGGTAAAGAGATATTAGTGGGTTCATGTGAAAGACCATCTGCTAGAATTATATGGGATGGGACCCACTACACAGAGGCAGCTAACAAGGTCCTTGTGGTTAGTTTGGTTCATGACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00245	107120	117991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000245s00014694.1	PF00657.17	Lipase_GDSL	224	390	1.60E-14
Glyur000245s00014694.1	PF00657.17	Lipase_GDSL	391	494	1.50E-08
Glyur000245s00014694.1	PF00657.17	Lipase_GDSL	708	843	2.60E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.926
SRR1783600	control	19.782
SRR1783602	moderate drought stress	21.136
SRR1811619	moderate drought stress	21.285

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.979
DRR006520	Root Summer glycyrrhizin high producing strain	9.059
DRR006521	Root Winter glycyrrhizin high producing strain	12.490
DRR006522	Root Winter glycyrrhizin high producing strain	12.044
DRR006523	Root Summer glycyrrhizin low producing strain	10.275
DRR006524	Root Summer glycyrrhizin low producing strain	9.844
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.747
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.323
SRR2868004	Drought Stress (root)	43.492
SRR2967015	Control (root)	50.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	68.528
SRR9715740	Leaf	42.960
SRR9715741	Leaf	85.811
SRR9715739	Root	16.022
SRR9715742	Root	14.135
SRR9715743	Root	14.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.885
SRR8749028	MeJA induced 9h	40.005
SRR8749029	MeJA induced 9h	12.805
SRR8749030	Uninduced	108.846
SRR8749031	Uninduced	123.263
SRR8749032	Uninduced	77.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.901
SRR8400027	Control - Root	16.995