Gene detail

Gene detail information of Glyur000245s00014685

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G44446.1	0	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
NR	AES59849.2	0	chlorophyllide A oxygenase [Medicago truncatula]
COG	NP_489047.1	2.00E-33	hypothetical protein alr5007 [Nostoc sp. PCC 7120]
Swissprot	tr\|Q9MBA1\|CAO_ARATH	0	Chlorophyllide a oxygenase, chloroplastic (Precursor)
trEMBL	tr\|G7I8G8\|G7I8G8_MEDTR	0	Chlorophyllide A oxygenase {ECO:0000313\|EMBL:AES59849.2}

Sequence

Transcript Sequence

>Glyur000245s00014685.1
CTTCCCTTCACACCACACTGGTTCTGGTTTTTTTGTCGTTAATAATTTTTACATTTGAACCCGCCATGAACGCCATAGCAACTGCTTCTGCTCTCACTCTTCCAATCTTTTGTAGAACTTCCAAGCTTGACTCCAAAAGGGGTTTGAAAGGTAGATTTGGAGTGTTTGCTGTATTTGGAGAAGATGTAGAGAAGAAAAATGATTGGGGTGCACTATTTCATGTAGAGGATCCAAGATCTAAAGTCCCACAGTGTAAAGGGAAGTTTTTGGATATATATCAAGCCTTAGAAGTGGCTAGACAGGATATTCAGTACTGTGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTCGAAGTTCTTAATCCCCTAGCTCGTGAATANAAGTCAATTGGCACCATGAAAAAGGAGCTAGCTGGGTTGCAGGAAGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGGGTTACCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTAAATGATAGACTATTGCAAGACAGAAGTACAGCTGAAGTTGCGCAGACATCCTCTTCTCCCAGNACTTCTGCAAAATCTGTAGAAACCNAAAGGAGAAGGCAGCCACGGAAAAGCTTGAATGTATCCGGTCCAGTTCAGTCATACCATCCCCACCTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTATTGACCTCAAGGATGATACCATGGTCCCATTAGAATGTTTTGAGGAACCATGGGTTATCTTTAGAGGGAAAGATGGGAAACCTGGATGTGTCCAGAATACCTGTGCACACAGAGCATGCCCTCTGCACCTTGGTTCTGTAAACGAGGGCCGTATCCAATGCCCCTACCACGGCTGGGAATATACCACTGATGGAAAATGTGAGAAAATGCCGTCTACNCGTCTGCTAAATGTGAAGATAAAGTCAATTCCGTGTTTTGAGAAAGAGGGGATGATCTGGATTTGGCCTGGCAATGACCCCCCAACAGCCACACTTCCATCTTTACTACCTCCTTCTGGATTTCAAGTCCATGCTGAGATTGTCATAGAACTTCCAGTTGAACATGGGTTACTNTTGGACAACCTTTTGGATCTTGCACATGCCCCTTTTACTCATACTTCAACGTTTGCTAAGGGATGGAGTGTTCCCAGCTTGGTGAATTTTTTGACACCTGCATCTGGCCTGCAAGGATACTGGGATCCCTATCCAATTGATATGGAGTTTCGACCACCTTGCATGGTTCTCTCAACCATTGGAATATCAAAGCCCGGGAAACTGGAGGGACAAAGCACCAACGAATGTGCAACACACCTGCACCAGCTTCATGTCTGCTTACCATCTTCAAAACAAAAAACAAGATTGCTATACAGAATGTCACTGGATTTTGCTCCTGTGCTTAAGCATATACCTTTTATGCAATATCTATGGAGACATTTTGCCCAACAGGTTTTAAATGAGGATCTACGGCTAGTAGTGGGCCAGCAAGAGAGAATGAACAATGGTGCAAATGTATGGAATGTCCCAGTTTCCTATGACAAGCTTGGGGTGAGGTACAGGTTGTGGAGAGATGCATTGGAGAGAGGAGCTAAGCAACTACCCTTCAGCACATACAACTAAATACACAAATTAAAACAGTGCTTTTTTGTATTCACTCAGTGATGCTTCTTAGATCCAATAAGGATTTTTTTTTTCTTCTTCTTTTTAACTCAAGGCTTCTTGGACAACCTTGCATTAGAAGGGCTATTTATCAGATTGGCTGCTTTGCTTTCCATGGTTCTCTCCATCAACCCTGCTAGGCCACCCGGGAACTGTTACATTGATCAGAGGTTGTNCCTTTTTCTTTTGCAAAATGACAGGGTTGTACTCTTGAGTCTTGACACTTTCCCCCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00245	79745	84218	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13600	CAO	EC:1.14.13.122	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0010277 chlorophyllide a oxygenase [overall] activity

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000245s00014685.1	PF00355.21	Rieske	214	298	1.50E-19
Glyur000245s00014685.1	PF08417.7	PaO	401	499	7.80E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.105
SRR1783600	control	2.117
SRR1783602	moderate drought stress	3.906
SRR1811619	moderate drought stress	3.961

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.952
DRR006520	Root Summer glycyrrhizin high producing strain	0.858
DRR006521	Root Winter glycyrrhizin high producing strain	10.194
DRR006522	Root Winter glycyrrhizin high producing strain	9.692
DRR006523	Root Summer glycyrrhizin low producing strain	2.615
DRR006524	Root Summer glycyrrhizin low producing strain	2.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.603
DRR006526	Leaf Summer glycyrrhizin high producing strain	78.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.085
SRR2868004	Drought Stress (root)	24.683
SRR2967015	Control (root)	16.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	83.936
SRR9715740	Leaf	91.339
SRR9715741	Leaf	92.516
SRR9715739	Root	6.748
SRR9715742	Root	13.841
SRR9715743	Root	10.474

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.171
SRR8749028	MeJA induced 9h	42.457
SRR8749029	MeJA induced 9h	26.470
SRR8749030	Uninduced	23.290
SRR8749031	Uninduced	19.605
SRR8749032	Uninduced	13.544

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.016
SRR8400027	Control - Root	6.878