Gene detail information of Glyur000245s00014683 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44414.1 | 2.00E-36 | |
| NR | KEH40527.1 | 1.16E-54 | zinc-ribbon domain protein [Medicago truncatula] |
| trEMBL | tr|A0A072VFF1|A0A072VFF1_MEDTR | 4.00E-55 | Zinc-ribbon domain protein {ECO:0000313|EMBL:KEH40527.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00245 | 78503 | 78841 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000245s00014683.1 | PF13248.1 | zf-ribbon_3 | 90 | 112 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.549 |
| SRR1783600 | control | 12.209 |
| SRR1783602 | moderate drought stress | 49.803 |
| SRR1811619 | moderate drought stress | 50.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.807 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.354 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.100 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.232 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.655 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.072 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.999 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.354 |
| SRR2868004 | Drought Stress (root) | 15.019 |
| SRR2967015 | Control (root) | 10.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.876 |
| SRR9715740 | Leaf | 7.814 |
| SRR9715741 | Leaf | 5.501 |
| SRR9715739 | Root | 16.084 |
| SRR9715742 | Root | 28.983 |
| SRR9715743 | Root | 21.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.029 |
| SRR8749028 | MeJA induced 9h | 4.645 |
| SRR8749029 | MeJA induced 9h | 8.865 |
| SRR8749030 | Uninduced | 2.506 |
| SRR8749031 | Uninduced | 1.017 |
| SRR8749032 | Uninduced | 4.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.696 |
| SRR8400027 | Control - Root | 27.589 |