Gene detail information of Glyur000245s00014679 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77460.2 | 0 | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein |
| NR | XP_004498349.1 | 0 | PREDICTED: uncharacterized protein LOC101488871 [Cicer arietinum] |
| Swissprot | tr|Q8GUG9|PUB11_ARATH | 6.00E-09 | U-box domain-containing protein 11 |
| trEMBL | tr|K7K8V7|K7K8V7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G26450.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00245 | 38012 | 47836 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000245s00014679.1 | PF00514.18 | Arm | 505 | 541 | 2.40E-07 |
| Glyur000245s00014679.1 | PF00168.25 | C2 | 2009 | 2088 | 3.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.326 |
| SRR1783600 | control | 10.235 |
| SRR1783602 | moderate drought stress | 6.459 |
| SRR1811619 | moderate drought stress | 6.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.533 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.471 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.463 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.586 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.025 |
| SRR2868004 | Drought Stress (root) | 15.826 |
| SRR2967015 | Control (root) | 16.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.170 |
| SRR9715740 | Leaf | 3.606 |
| SRR9715741 | Leaf | 3.205 |
| SRR9715739 | Root | 2.784 |
| SRR9715742 | Root | 13.076 |
| SRR9715743 | Root | 10.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.677 |
| SRR8749028 | MeJA induced 9h | 11.129 |
| SRR8749029 | MeJA induced 9h | 6.291 |
| SRR8749030 | Uninduced | 5.538 |
| SRR8749031 | Uninduced | 3.995 |
| SRR8749032 | Uninduced | 3.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.790 |
| SRR8400027 | Control - Root | 22.606 |