Gene detail information of Glyur000244s00014832 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06860.1 | 2.00E-67 | polygalacturonase inhibiting protein 1 |
| NR | XP_003554195.2 | 5.39E-102 | PREDICTED: polygalacturonase inhibitor-like [Glycine max] |
| COG | YP_004735589.1 | 8.00E-23 | Receptor-like protein kinase [Zobellia galactanivorans] |
| Swissprot | tr|Q05091|PGIP_PYRCO | 6.00E-96 | Polygalacturonase inhibitor (Precursor) |
| trEMBL | tr|I1N956|I1N956_SOYBN | 2.00E-102 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G32700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 234643 | 235359 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014832.1 | PF08263.7 | LRRNT_2 | 27 | 64 | 9.50E-12 |
| Glyur000244s00014832.1 | PF13516.1 | LRR_6 | 117 | 139 | 1.3 |
| Glyur000244s00014832.1 | PF12799.2 | LRR_4 | 142 | 181 | 3.50E-08 |
| Glyur000244s00014832.1 | PF00560.28 | LRR_1 | 195 | 213 | 0.43 |
| Glyur000244s00014832.1 | PF00560.28 | LRR_1 | 215 | 232 | 0.58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.446 |
| SRR1783600 | control | 3.316 |
| SRR1783602 | moderate drought stress | 1.736 |
| SRR1811619 | moderate drought stress | 1.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.345 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.459 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.259 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.042 |
| SRR2868004 | Drought Stress (root) | 1.385 |
| SRR2967015 | Control (root) | 1.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.317 |
| SRR9715740 | Leaf | 0.822 |
| SRR9715741 | Leaf | 4.923 |
| SRR9715739 | Root | 7.370 |
| SRR9715742 | Root | 6.780 |
| SRR9715743 | Root | 8.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.221 |
| SRR8749028 | MeJA induced 9h | 420.613 |
| SRR8749029 | MeJA induced 9h | 267.718 |
| SRR8749030 | Uninduced | 898.294 |
| SRR8749031 | Uninduced | 1413.697 |
| SRR8749032 | Uninduced | 619.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.462 |
| SRR8400027 | Control - Root | 1.883 |