Gene detail

Gene detail information of Glyur000244s00014824

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42220.1	1.00E-90	Rhodanese/Cell cycle control phosphatase superfamily protein
NR	XP_007162302.1	3.41E-147	hypothetical protein PHAVU_001G140700g [Phaseolus vulgaris]
COG	YP_003807495.1	3.00E-06	rhodanese domain protein [Desulfarculus baarsii DSM 2075]
Swissprot	tr\|O48529\|STR9_ARATH	1.00E-113	Rhodanese-like domain-containing protein 9, chloroplastic (Precursor)
trEMBL	tr\|V7CZG6\|V7CZG6_PHAVU	1.00E-147	Uncharacterized protein {ECO:0000313\|EMBL:ESW34296.1}

Sequence

Transcript Sequence

>Glyur000244s00014824.1
NTGTGTTAACCTTTGAAAGCATACTAGTTCATCACAGTTCGTCATTCTTACAATGGCAGGGACTGGTTTCTACCCCTNCTGTCTTTCCTCCTCCAGCAACTTAGGGACATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCGTGCCAGGGAAACTACCTGGAAGTACTGGAAGGAGAAGGTTGACAATAAGAGCAGAAGTGAAGTATGTAACCGCTGAAGAAGCTAAGGAACTTGTGGCAGTTGATGGATATAGTGTTCTGGATGTGAGGGATAAAACTCAGTTTGAGAGAGCTCACATAAAAACATGTTCTCATGTGCCTCTTTTTGTTGAAAATCAAGACAATGATCTCGGTACAATCATAAAAAGGACTGTGCACAATAACTTTTCTGGGTTGTTCTTTGGGTTACCATTCACTAAGCCAAATCCTGATTTTTTACAAACTGTNAAGAGCCAGTTTCAATCTGAAAGTAAACTCTTGGTTGTATGTCAGGAAGGAATGAGGTCTGCTTCAGCAGCCAAAAAGTTAGAGGAAGCTGGTTTCAAAAATGTAGCATGCATAACATCTGGCCTTCAAACTGTGAAACCAGGGACATTTGATTCTGTTGGCTCCAAGGAGTTGCAGAATGCTGGGAAAGCTGGTTTGGTGACAATCCAAGGAAAAATTTCAACTGTGTTGGGAACTGTTCTTATCTGTGCATTTTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGTTCCAATTGGTCCCTGCGGGCTAAGACTGAAAATTCCATTAATTAATTGTTTCCCCCCCACTCACTGTGTATGTGGCATAATTGAGAAACGTAAGATTAGAATTGAGGAACATAAAAACATTAGATAAGAATGAGGTGATGGAAGGGCTAATGTCAGTATTCTCCATTAAGCAATGTCTACGCCCATTTCCAATGTTTTAGTTCAGTTCTTTCGAACATACATTACTATATCTATAGTGTCATTGTAGTTTTGCTTCGAAGATAGCCATTTTACTAGTTTGCTTCTTGTACTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00244	189668	192313	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000244s00014824.1	PF00581.15	Rhodanese	55	176	8.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.037
SRR1811619	moderate drought stress	0.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.107
DRR006522	Root Winter glycyrrhizin high producing strain	0.105
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.767
DRR006526	Leaf Summer glycyrrhizin high producing strain	62.850

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.362
SRR2868004	Drought Stress (root)	3.486
SRR2967015	Control (root)	0.492

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.156
SRR9715740	Leaf	66.119
SRR9715741	Leaf	56.943
SRR9715739	Root	0.000
SRR9715742	Root	0.059
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.126
SRR8749028	MeJA induced 9h	2.120
SRR8749029	MeJA induced 9h	0.614
SRR8749030	Uninduced	2.691
SRR8749031	Uninduced	1.772
SRR8749032	Uninduced	5.461

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.734
SRR8400027	Control - Root	0.903