Gene detail information of Glyur000244s00014810 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51130.1 | 5.00E-65 | Nse4, component of Smc5/6 DNA repair complex |
| NR | XP_004493579.1 | 2.61E-130 | PREDICTED: non-structural maintenance of chromosome element 4-like isoform X5 [Cicer arietinum] |
| Swissprot | tr|Q9C689|NSE4A_ARATH | 5.00E-78 | Non-structural maintenance of chromosomes element 4 homolog A |
| trEMBL | tr|K7KF22|K7KF22_SOYBN | 2.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G30010.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 106347 | 108351 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014810.1 | PF08743.5 | Nse4_C | 147 | 237 | 9.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.359 |
| SRR1783600 | control | 0.345 |
| SRR1783602 | moderate drought stress | 0.276 |
| SRR1811619 | moderate drought stress | 0.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.985 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.913 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.461 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.339 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.140 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.593 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.737 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.424 |
| SRR2868004 | Drought Stress (root) | 4.147 |
| SRR2967015 | Control (root) | 4.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.823 |
| SRR9715740 | Leaf | 1.256 |
| SRR9715741 | Leaf | 1.595 |
| SRR9715739 | Root | 0.210 |
| SRR9715742 | Root | 1.027 |
| SRR9715743 | Root | 1.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.531 |
| SRR8749028 | MeJA induced 9h | 1.105 |
| SRR8749029 | MeJA induced 9h | 0.444 |
| SRR8749030 | Uninduced | 1.595 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.579 |
| SRR8400027 | Control - Root | 1.965 |