Gene detail information of Glyur000244s00014809 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06770.1 | 6.00E-25 | KH domain-containing protein / zinc finger (CCCH type) family protein |
| NR | NP_001242454.1 | 1.33E-73 | uncharacterized protein LOC100803981 [Glycine max] |
| Swissprot | tr|Q9C7C3|C3H36_ARATH | 2.00E-33 | Zinc finger CCCH domain-containing protein 36 |
| trEMBL | tr|C6TAD1|C6TAD1_SOYBN | 5.00E-74 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18783.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 100727 | 102979 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014809.1 | PF00013.24 | KH_1 | 115 | 167 | 1.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.071 |
| SRR1783600 | control | 34.164 |
| SRR1783602 | moderate drought stress | 60.259 |
| SRR1811619 | moderate drought stress | 59.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.126 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.252 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.677 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.891 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.085 |
| SRR2868004 | Drought Stress (root) | 1.693 |
| SRR2967015 | Control (root) | 2.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.547 |
| SRR9715740 | Leaf | 2.519 |
| SRR9715741 | Leaf | 2.318 |
| SRR9715739 | Root | 7.341 |
| SRR9715742 | Root | 7.444 |
| SRR9715743 | Root | 7.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.203 |
| SRR8749028 | MeJA induced 9h | 1.941 |
| SRR8749029 | MeJA induced 9h | 2.174 |
| SRR8749030 | Uninduced | 1.933 |
| SRR8749031 | Uninduced | 1.382 |
| SRR8749032 | Uninduced | 3.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.753 |
| SRR8400027 | Control - Root | 3.729 |