Gene detail information of Glyur000244s00014808 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06760.1 | 9.00E-29 | Late Embryogenesis Abundant 4-5 |
| NR | AAG37451.1 | 6.55E-92 | seed maturation protein LEA 4 [Glycine tomentella] |
| Swissprot | tr|Q01417|PM1_SOYBN | 3.00E-80 | 18 kDa seed maturation protein |
| trEMBL | tr|Q9FNW3|Q9FNW3_GLYTO | 2.00E-92 | Seed maturation protein LEA 4 {ECO:0000313|EMBL:AAG37451.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 97086 | 98557 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014808.1 | PF03760.10 | LEA_1 | 9 | 80 | 5.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.730 |
| SRR1783600 | control | 4.759 |
| SRR1783602 | moderate drought stress | 11.042 |
| SRR1811619 | moderate drought stress | 11.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.006 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.053 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 167.924 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 165.320 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.120 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 72.424 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 73.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.627 |
| SRR2868004 | Drought Stress (root) | 9.114 |
| SRR2967015 | Control (root) | 18.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.575 |
| SRR9715740 | Leaf | 4.311 |
| SRR9715741 | Leaf | 19.760 |
| SRR9715739 | Root | 5.119 |
| SRR9715742 | Root | 10.686 |
| SRR9715743 | Root | 9.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.394 |
| SRR8749028 | MeJA induced 9h | 45.849 |
| SRR8749029 | MeJA induced 9h | 13.425 |
| SRR8749030 | Uninduced | 11.584 |
| SRR8749031 | Uninduced | 1.476 |
| SRR8749032 | Uninduced | 2.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.902 |
| SRR8400027 | Control - Root | 13.638 |