Gene detail information of Glyur000244s00014805 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12110.1 | 3.00E-144 | actin-11 |
| NR | ABR17342.1 | 0 | unknown [Picea sitchensis] |
| COG | YP_003266114.1 | 4.00E-60 | actin/actin family protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|P46258|ACT3_PEA | 0 | Actin-3 |
| trEMBL | tr|B8LNW2|B8LNW2_PICSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ABR17342.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 78217 | 81125 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014805.1 | PF00022.14 | Actin | 5 | 95 | 3.60E-28 |
| Glyur000244s00014805.1 | PF00022.14 | Actin | 118 | 336 | 5.50E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.704 |
| SRR1783600 | control | 1.792 |
| SRR1783602 | moderate drought stress | 2.779 |
| SRR1811619 | moderate drought stress | 2.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.134 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.229 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.104 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.111 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.377 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.060 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.885 |
| SRR2868004 | Drought Stress (root) | 1.538 |
| SRR2967015 | Control (root) | 1.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.328 |
| SRR9715740 | Leaf | 0.073 |
| SRR9715741 | Leaf | 0.189 |
| SRR9715739 | Root | 1.080 |
| SRR9715742 | Root | 1.547 |
| SRR9715743 | Root | 1.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.099 |
| SRR8749028 | MeJA induced 9h | 1.944 |
| SRR8749029 | MeJA induced 9h | 3.065 |
| SRR8749030 | Uninduced | 1.023 |
| SRR8749031 | Uninduced | 0.306 |
| SRR8749032 | Uninduced | 0.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.689 |
| SRR8400027 | Control - Root | 3.976 |