Gene detail

Gene detail information of Glyur000244s00014795

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42040.1	3.00E-18
NR	XP_003625273.1	9.20E-82	hypothetical protein MTR_7g093350 [Medicago truncatula]
Swissprot	tr\|Q6AWY2\|GRF7_ORYSJ	1.00E-05	Growth-regulating factor 7
trEMBL	tr\|G7KVE9\|G7KVE9_MEDTR	3.00E-82	WRC protein {ECO:0000313\|EMBL:AES81491.1}

Sequence

Transcript Sequence

>Glyur000244s00014795.1
ATGACGTGTATAAAAATCATTTTTCAATTTTGTAATGTAACGCTTTTCTCCCACCCTCTCTTCCTCGTCGTACTCTGTCACTTTCTGTGTCTCTCTCCTCCACCGGCTACCGTCCCTCCCGGTGGACACCCTTACACGTGCTTCCTCCTCCTAAAACTCTGTCACACGTGCCACCCCTCACCCATACAACTCCCTTCCTTTCTGTGGTGCAACAAATAAAAGTTAGAGAGAGAATAACTCATGGAAGCAATATATATGGAAGGAAGGATATAGTCATAGTGTGTGTGTGTGTATCCGTTTGTGTGAGTAGTGTGAGAGAGAAAGAGAGAGAGAGAGAGAAAGAGTTTTGATAAAAAAGCATAGATTTTTCCTGGTCTTGGACATGTAGTAGTAGTAGTAGATGGGTTTTACCCCCTTCCTCTCTAATTTCTATCTTCCTTTTTCTCTGAAATCTGAAAACTGAAAGATCGCTTGTTGTTGTGGTCTTTGCTGAGAGTGAAAATCTCGTGAGTTGTGTGGGTGTGTGGCAGTTTTTCTATCTTGCACCGATGAGGATCCGGAAAAGGCCNGTGCTTTCTTCTTTTTCGCCGTTGCATCTCTCAGATCCCCACCTGATCAACCGGTCACCGGTGGTGGTGCAACTCGGCGACGCTGCGGCTGCTTCAACTTCGATACTCCCGCAGCAACATGGTGCAGCAGCACCTGCATCGAGCTCGGGTCGTCATCCGCCGTCTGATCAACCACTCCAACTGATCGGGAAACAAAGCAACGGCTGCGATGATCCATACGGCATCGGGGAAAGTGGGGCACACAAACAGCACAACAAGCAAGACCCTTTGGATGGGGAAGTTAGGGGGCAAGAGAGTGGAGACTCAGGAGAGAAGGGTAATCATACCAGGAAAGGAGTCATCTTTTCTGAGAACAATAACAACGCAACTGATCATGATCACAGTAGTAGTGGTAATAGTAATGGTAAGAAAATAACGAAGCCTAGGATGAAGACGAAGATGAACAAGAAATGTTCCTCCATGGTGCAGAATGGTAATAACAACATGGAATTACGAGAAGATGGATTAGAAGAAGCGGAGGAGGCAAAAGCGGAGGTGGTGAATATTGGAAGCAGCAATAAGAAGAGGACAAAGGGGAGTGCAGTGATGGAAGGGTCACGGTGCAGTCGTGTGAATGGGAGGGGATGGAGGTGTTGTCAGCAAACACTGGTGGGTTACTCGCTGTGTGAGCATCACTTGGGGAAAGGAAGGCTCAGAAGCATGACCAGTGTTAGAAACCGATCCATTGGAGCTACAACTACTACTACTACTACTACTACTACTACTACTACTACTAGTACTGCACCTGCACCACCAAAGAAGAAGGTGCACAATAATCTTGATTTATCTATATCTGTATCTGGTGCTGCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTCTTGAAAAACAAATGATCAGAGAGTCTGGTGGTCTTGATGATGATCCCTGTTTGGAGAACAATGAGACGAAGAAGGCAGTGGTAATCACAACGAAGAAGAGGATGAAGCTTGGAATGGTAAAAGCGCGGTCCATAAGCAGCTTGTTGGGACAGACAAACACTACCACCCAGCTTGCTGTTGTAGCTGCTGACGAGAACAACAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00244	24568	27275	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000244s00014795.1	PF08879.5	WRC	203	246	4.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.956
SRR1783600	control	8.665
SRR1783602	moderate drought stress	6.721
SRR1811619	moderate drought stress	6.675

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.794
DRR006520	Root Summer glycyrrhizin high producing strain	9.963
DRR006521	Root Winter glycyrrhizin high producing strain	9.645
DRR006522	Root Winter glycyrrhizin high producing strain	9.215
DRR006523	Root Summer glycyrrhizin low producing strain	9.685
DRR006524	Root Summer glycyrrhizin low producing strain	9.216
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.425

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.927
SRR2868004	Drought Stress (root)	27.385
SRR2967015	Control (root)	29.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.581
SRR9715740	Leaf	14.036
SRR9715741	Leaf	20.945
SRR9715739	Root	1.802
SRR9715742	Root	7.747
SRR9715743	Root	6.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.459
SRR8749028	MeJA induced 9h	10.000
SRR8749029	MeJA induced 9h	8.853
SRR8749030	Uninduced	8.115
SRR8749031	Uninduced	4.905
SRR8749032	Uninduced	5.368

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.868
SRR8400027	Control - Root	13.705