Gene detail

Gene detail information of Glyur000243s00013151.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01250.1	1.00E-51	WRKY family transcription factor
NR	XP_006601715.1	3.92E-140	PREDICTED: transcription factor isoform X1 [Glycine max]
Swissprot	tr\|O04609\|WRK22_ARATH	1.00E-75	WRKY transcription factor 22
trEMBL	tr\|C6T771\|C6T771_SOYBN	1.00E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU17673.1}

Sequence

Transcript Sequence

>Glyur000243s00013151.1
CGCCTTCTTTTGTCTCTCTCTTTCTCTCTCTCTAAAAAGAGAAGCAGCAGCAGCAGAAGAGGTACAGACATAACAGAGTTTGTCTCTCTACGGTTATGGAGGAAGATTGGGATCTCCACGCGGTGGTTAGAGGCTGCTCCGCAGTTACCTCCACCACAGCTGTACCCTCTGTGTCTTCTTCTTCNTCTGGTTTTGGCACTTCTTGTTCCTTGTTGCAGCCTGAAGCTTCTTCTTCATGTGGGTTCTCTATCTTTGACGGTGAACAACAAAAAGGTCAAATTTTTTCCCCTTCTGCAGCATACCCATTTGAAGCAAGAGGCTCCATTCAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTCCCCAAATCACACCCTCTCCCATTGCAAACTTCTCCTCTGTCCTCTTCATTCTCTTATTCCTCTGTTGCGGCACCACCCAAATCAGCTCAAACGCAAGAGAAACAACAGCAGCAGCAACGGATTAAGCAGCCACACCAACACCAAGCCGGTTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAACTTAAGAAAGTTTGTCAAGTCCCAGTTGAGAGTCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAAGGGTCACCATATCCAAGGGGATACTATAGATGTAGCAGCTCAAAAGGATGTTTAGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTCATAGTAACCTACACAGCTGAACACAACCACCCTGCTCCNACTCACAGAAACTCTCTTGCTGGTTCCACACGCCAGAAGCCATTGACACCCCAAAATGCTACCACCACCACTGGTTCAGACTCTGACAAGGCCCTCACAAAACCTTCTTCCCCTGCAAACTCAGGGGCTGAGGAGGATCAAGAGGTTCCAACTCAGGGAGAGAAGTCAGATCAGAGCAGAGAAGAAGAGAAGGAGGATGATGAGGAATTATTAGGAGAAGATGAATTTGGGGGGTTGTCTGATATGGTNCTATCAGATGATTTCTTTGAGAGCTTTGATGAACTGAGTCAACTCAGTGCTGTTGTCACCGGAGGAGAGTGCTTCGTTGATCCCTTTTCGGCCATTGCAATCCCTGCTTGGAGTGCTGCTACAGCTGCAAGTGGTAGCTGACTCGTTATTGGGAACTACTCATCACAACATGTGGCAATTGTTTCATGCTTTTCACTGCAGAGAATAGGATAGGAACTCTTCTTTTTTGGTTTTTGTTTTTCTCTTTTTGTTTGTAGAGAAAATGGAATATTTTGTAGGAATCTTTANTAACAATGGAAGTATAGTAGTGAATAGTAAGGTAGATTAAGCATTTATATCTCTGTTAATTTTATATTAAAATTGATGATTATTATTAGGCAATTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00243	232339	234000	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000243s00013151.1	PF03106.10	WRKY	165	223	2.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.157
SRR1783600	control	2.189
SRR1783602	moderate drought stress	1.237
SRR1811619	moderate drought stress	1.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.951
DRR006520	Root Summer glycyrrhizin high producing strain	21.150
DRR006521	Root Winter glycyrrhizin high producing strain	19.321
DRR006522	Root Winter glycyrrhizin high producing strain	19.088
DRR006523	Root Summer glycyrrhizin low producing strain	44.031
DRR006524	Root Summer glycyrrhizin low producing strain	43.249
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.902

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.040
SRR2868004	Drought Stress (root)	23.121
SRR2967015	Control (root)	62.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.566
SRR9715740	Leaf	14.205
SRR9715741	Leaf	45.300
SRR9715739	Root	14.488
SRR9715742	Root	45.979
SRR9715743	Root	40.187

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	186.897
SRR8749028	MeJA induced 9h	190.697
SRR8749029	MeJA induced 9h	173.090
SRR8749030	Uninduced	132.337
SRR8749031	Uninduced	227.894
SRR8749032	Uninduced	107.828

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.030
SRR8400027	Control - Root	22.782