Gene detail information of Glyur000243s00013122 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54900.1 | 1.00E-52 | CAX interacting protein 1 |
| NR | NP_001236264.1 | 1.53E-93 | uncharacterized protein LOC100500060 [Glycine max] |
| COG | YP_007080448.1 | 2.00E-43 | monothiol glutaredoxin [Pleurocapsa sp. PCC 7327] |
| Swissprot | tr|Q84Y95|GRS14_ARATH | 5.00E-66 | Monothiol glutaredoxin-S14, chloroplastic (Precursor) |
| trEMBL | tr|C6SZX3|C6SZX3_SOYBN | 6.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G47570.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00243 | 43312 | 46283 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000243s00013122.1 | PF00462.19 | Glutaredoxin | 90 | 153 | 3.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 117.420 |
| SRR1783600 | control | 119.129 |
| SRR1783602 | moderate drought stress | 99.016 |
| SRR1811619 | moderate drought stress | 99.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 86.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.829 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.847 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.704 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 66.666 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.610 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 201.224 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 189.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.484 |
| SRR2868004 | Drought Stress (root) | 39.700 |
| SRR2967015 | Control (root) | 52.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 123.035 |
| SRR9715740 | Leaf | 188.996 |
| SRR9715741 | Leaf | 143.001 |
| SRR9715739 | Root | 54.887 |
| SRR9715742 | Root | 36.860 |
| SRR9715743 | Root | 39.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.861 |
| SRR8749028 | MeJA induced 9h | 7.296 |
| SRR8749029 | MeJA induced 9h | 14.719 |
| SRR8749030 | Uninduced | 13.498 |
| SRR8749031 | Uninduced | 7.096 |
| SRR8749032 | Uninduced | 9.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.526 |
| SRR8400027 | Control - Root | 62.694 |