Gene detail information of Glyur000243s00013121 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79790.1 | 2.00E-80 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | AFK41397.1 | 2.29E-142 | unknown [Lotus japonicus] |
| COG | NP_923663.1 | 2.00E-40 | hypothetical protein glr0717 [Gloeobacter violaceus PCC 7421] |
| trEMBL | tr|I3SMA5|I3SMA5_LOTJA | 9.00E-143 | Uncharacterized protein {ECO:0000313|EMBL:AFK41397.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00243 | 38104 | 40929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20860 | FHY1 | EC:3.1.3.102 3.1.3.104 | Riboflavin metabolism | map00740 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000243s00013121.1 | PF13419.1 | HAD_2 | 76 | 248 | 6.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.331 |
| SRR1783600 | control | 10.443 |
| SRR1783602 | moderate drought stress | 9.340 |
| SRR1811619 | moderate drought stress | 9.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.074 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.168 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.660 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.572 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.888 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.755 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.744 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.287 |
| SRR2868004 | Drought Stress (root) | 18.062 |
| SRR2967015 | Control (root) | 8.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.941 |
| SRR9715740 | Leaf | 35.000 |
| SRR9715741 | Leaf | 32.675 |
| SRR9715739 | Root | 1.498 |
| SRR9715742 | Root | 1.719 |
| SRR9715743 | Root | 1.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.142 |
| SRR8749028 | MeJA induced 9h | 3.857 |
| SRR8749029 | MeJA induced 9h | 2.161 |
| SRR8749030 | Uninduced | 5.959 |
| SRR8749031 | Uninduced | 4.124 |
| SRR8749032 | Uninduced | 2.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.628 |
| SRR8400027 | Control - Root | 15.310 |