Gene detail

Gene detail information of Glyur000243s00013117

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65380.1	0	Leucine-rich repeat (LRR) family protein
NR	BAK39955.1	0	leucine-rich repeat receptor-like protein [Lotus japonicus]
COG	YP_004775215.1	6.00E-39	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SPE8\|CLV2_ARATH	0	Leucine-rich repeat receptor-like protein CLAVATA2 (Precursor)
trEMBL	tr\|F7J695\|F7J695_LOTJA	0	Leucine-rich repeat receptor-like protein {ECO:0000313\|EMBL:BAK39955.1}

Sequence

Transcript Sequence

>Glyur000243s00013117.1
ATGATTCTCCTGTGTGCAACAACAACAACACCTTCCCATTCAGTTGTTGATATCCACCCACAAGACAAAGCATCCCTTTTGTGGTTCAAGTCATGGCTGCATGACCCAAACCAGAGCTTGTCCAACTGGGGTGGCTCCAACAACTGCACCACATGGACTGGAATCACCTGTGACAACAGTACTGGCAGGGTTGTTTCCATCAACCTGACCAGTATGAACTTGTCAGGCCAAATCCACCCCAGTTTTTGTAACCTTTCTTATCTTAACAAGGTGGGTTTGTCCTACAACAACTTCACATGCCCTCTACCTGTTTGTTTTGGGAACTTGCTTAACCTTAGAGCCATTGATCTCAGCCACAACAGGTTCCATGGTGGGATACCAGACTCCTTCATGAGGCTTAGGCACCTCACTGAGCTTGTTTTGAATGGGAATCCAGCTTTGGGGGGTCCACTTCCTGTTTGGATAGGTAACTTCTCTTCAAATCTGGAAAGGCTCCATCTTGGTTTCAGTTCATTCATTGGGGTTGTACCTGAGAGCTTGCTTTACTTGAAGTCCCTCAAGTATTTGAACCTTGAANACAATCTATTGTCTGGTAATTTGGTTGATTTTCACCAGCCTTTGGTTTTCCTCAATCTTGCTTCCAATCAGTTTACAGGCACTTTGCCTTGCTTTGCAGCTTCAGTTCAGTCCCTAACTGTGTTGAATCTGTCTAACAATTCCATTGTTGGGGGATTACCTGCTTGTATTGCTTCCTTCCAAGCTTTGACTCATCTAAACCTATCAGGGAACCACTTGAGGTATAGGATATATCCAAGGCTTGTGTTCTCAGAGAAGCTTCTAGTTTTGGATTTGAGTAATAATGATTTGTCTGGTCCTATTCCCAGTAAAATTGCTGAGACTACAGAGAAACTTGGCCTTGTTCTTCTTGACCTCTCGCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAACTGAAAAGCTTGCAGGCCTTGTTCCTTTCTCACAATCTTCTTTCTGGGGAGATTCCTGCTAGGATTGGAAACTTGACTTATCTTCAAGTCATTGATCTCTCACACAACTCTTTGTCTGGTACAATTCCATTCAGTATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTTAATAACAACAATCTTTCCGGTGTAATTCAACCGGAGTTTGATGCGTTGGATATCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGGCTATCCCGCTCACTTTGGCTGGATGTAAATCTCTGGAGGTTGTAGATTTTAGTTCCAATGATCTTTCTGGATCCTTGAATGATGCAATAATCAAATGGACAAACCTCAGGTATCTTTCTCTTGCTCAGAACAAGTTCAGTGGAACTTTGCCTAGTTGGTTGTTCACATTTCAAGCTATAGAGACAATGGATTTGTCACACAACAAGTTTTCTGGCTTTATACCTGACATTAGTTTTAAGGGTAGCTTAGTATTTAACTCAAGGAATGTTACTGTTAAAGAGCCATTGGTTGATGCAAGCGAGGTTCAACCGAAAGTTTCGGTGGTTGTTTCTGATAGCAATCAACTCAGTTTCACATATGATCTTTCGTCAATGGTCGGAATCGATCTATCCAATAATTTGCTACATGGGGAGATTCCAAGGGGCTTATTTGGCCTAGCTGGCCTCGAATATCTGAACTTGTCATACAATTTTCTCGATGGACAGCTTCCCGGTTTGCAGAAAATGCAGGATTTGAAAGCCTTNGATTTGTCACATAATTCCCTGTCAGGACATATCCCAGGAAACATTTCNACCCTTCAAGATCTGACCATATTGAATCTGTCTTACAACTGTTTTTCTGGATATGTTCCCCAGAAGCAAGGGTATGGAAGATTTCCTGGTGCATTTGCTGGGAATCCAGATTTATGCTTGGAATCTTCCAGTGGAATATGCGATGATGGAAGGATTCCATCGACNCGAGGCAGTTCCTTTCGGGAAGATAAAATGGATGGACCAATATCTGTGGGGATTTTCTTTATCAGTGCCTTTATTAGTTTTGATTTTGGTGTTGTTTTTCTGTTCTGTTCTGCTCGGGCAAGAAAATACATTCTCCAAACCAAAGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00243	24624	26753	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000243s00013117.1	PF08263.7	LRRNT_2	20	58	1.20E-08
Glyur000243s00013117.1	PF13855.1	LRR_8	104	144	5.20E-07
Glyur000243s00013117.1	PF13855.1	LRR_8	207	265	4.20E-09
Glyur000243s00013117.1	PF00560.28	LRR_1	278	295	1.1
Glyur000243s00013117.1	PF00560.28	LRR_1	354	372	0.11
Glyur000243s00013117.1	PF13855.1	LRR_8	377	436	1.00E-06
Glyur000243s00013117.1	PF00560.28	LRR_1	449	469	1.2
Glyur000243s00013117.1	PF00560.28	LRR_1	563	582	0.93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.168
SRR1783600	control	3.338
SRR1783602	moderate drought stress	3.294
SRR1811619	moderate drought stress	3.392

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.315
DRR006520	Root Summer glycyrrhizin high producing strain	6.108
DRR006521	Root Winter glycyrrhizin high producing strain	1.294
DRR006522	Root Winter glycyrrhizin high producing strain	1.138
DRR006523	Root Summer glycyrrhizin low producing strain	3.767
DRR006524	Root Summer glycyrrhizin low producing strain	3.999
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.189

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.310
SRR2868004	Drought Stress (root)	7.635
SRR2967015	Control (root)	8.498

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.120
SRR9715740	Leaf	3.913
SRR9715741	Leaf	2.976
SRR9715739	Root	5.682
SRR9715742	Root	5.496
SRR9715743	Root	6.854

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.292
SRR8749028	MeJA induced 9h	0.518
SRR8749029	MeJA induced 9h	0.185
SRR8749030	Uninduced	0.036
SRR8749031	Uninduced	0.090
SRR8749032	Uninduced	0.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.878
SRR8400027	Control - Root	5.182