Gene detail

Gene detail information of Glyur000243s00013112

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16530.1	2.00E-137	Auxin efflux carrier family protein
NR	XP_003624144.1	0	Auxin Efflux Carrier [Medicago truncatula]
COG	YP_001631320.1	1.00E-07	hypothetical protein Bpet2710 [Bordetella petrii DSM 12804]
Swissprot	tr\|Q9FFD0\|PIN8_ARATH	0	Putative auxin efflux carrier component 8
trEMBL	tr\|Q673E6\|Q673E6_MEDTR	0	Putative auxin efflux carrier protein 9 {ECO:0000313\|EMBL:AAT48629.1}

Sequence

Transcript Sequence

>Glyur000243s00013112.1
CATTCATTTTGCATATAGCTAACCATATAGCTATAAGTTCAATACTCATAATTTTTTCCCTCAAGAAATTAAGAGGTTATAATAGAGAAGAAACAAATTAAAAAAGATGATTGGGTGGGAAGATGTGTACAAGGTGGTGGTAGCAGTGGTGCCACTCTACGTTGCTCTATTCTTAGGCTATGGTTCAGTAAAGTGGTGGAACATCTTCACAAGGGAGCAGTGTGATGCAATAAACAAGTTGGTGTGTTACTTCACCTTACCACTCTTCACCTTTGAGTTCACAGCACACATAGACCCTTTCAAGATGAACTTCTTGTTCATAGGTGCAGACACTCTCTCCAAGCTCATCATTGTGTTAGTGCTTGCACTTTGGGCAAAGTGGAGTAGCAAAGGGAGCTTTTGTTGGTTCATAACGAGCTTCTCTTTGTGTACTCTCACCAATGCTCTCGTTGTTGGGGTCCCAATGGTGAAGCCTATGTATGGAGCCATGGGTGTGGACCTTGTGGTTCAGTCCTCCGTTGTGCAAGCCATCATATGGCTCACTTTGCTTCTCTTTGTGTTGGAGTTTCGAAGAACGAAAATTGAGGGCACCACCACNACCTTTAAGCCCACTAAGCCAAAAACAACAATCATAGAAAGGAAAGATGTGGAGGTAACTACCATGGCCGTGGCTGTGGATGTGAATATTGAGGATTTGATGTTGGAAGATAGTGGTGGTGGTAGGCTTCCTTTCTTCCAGTTGATGAAGGTTGTGTGGCTCAAACTTATAGTGAACCCAAACTCCTATGGTTGTGTCATTGGCGTTGCCTGGGCTTTCATATCTAATAGGTGGAATTTGGAGATGCCAAGCATGGTAGAGGGGTCNATATTGATCATGTCAAGGGCTGGAACGGGCACGGCCATGTTTAGTATGGGTATTTTCATGGCACTTCAGGAAAAGGTGATTTCGTGTGGACCAAGTCTGACTGTAATCGGTTTGGTTTTGAAGTTCATTGCGGGACCCGCAGCCATGGCTATTAGTGCCATCGTTGTAGGATTACATGGTGATGTTTTACGAGTCGCTATCATTCAGGCAGCAGTACCACAATCTATCACATCCTTCATTTACGCTAAAGAATATGGAGTGCATCCTGAGGTTCTTAGCACAGCGGTGATCTTTGGAATGATTGTTTCGCTTCCGATCTTAATTGCCTACTACGCAATATTGGAGTTTATGCATTGATCCTCTTAGAGATACCTTCTTTAAAACAAATACTTAAAGAGTCAAGAAAGAGGATAATTCAAATTACCTTTCTTCTCCAATTAAAGTTGAACAGAAATTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00243	6360	10523	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000243s00013112.1	PF03547.13	Mem_trans	10	364	1.80E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.114
SRR1783600	control	0.119
SRR1783602	moderate drought stress	0.029
SRR1811619	moderate drought stress	0.004

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.327
DRR006520	Root Summer glycyrrhizin high producing strain	0.324
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.148
DRR006524	Root Summer glycyrrhizin low producing strain	2.284
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.855

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.698
SRR2868004	Drought Stress (root)	5.518
SRR2967015	Control (root)	3.608

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.918
SRR9715740	Leaf	33.898
SRR9715741	Leaf	23.971
SRR9715739	Root	0.133
SRR9715742	Root	1.430
SRR9715743	Root	1.591

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.399
SRR8400027	Control - Root	0.399